Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120837g00033 ATGGCTGTTACCTTCTCAGATCTGCACACAGAGTCTGGTCTCAAAACCCTAGATGAGTTCCTCTCTGGGAAGACCTATGTTTCTGGGGATCAGTTGACAAAAGATGATATCAAAGTGTATGGTTTTGTTTCGGAGAAGCCAGGTAGCTCTTTTCCCAGTGCTGCCAAGTGGTACGATGTTGTCTCTTCCCACCTTGCTGCAAGCTTCCCTGGCAAAGCTCAAGGTGTGAAATTTGCTGGCCAAGGTGCTCCAGCTGAAGCTGCACCTGCCAAACCGGCGGCGGCTGCTGCTGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAGGATAAGAAAGCAGCGGAGGAGAGGGAGGCTGCAAAGAAGACTGCGAAGAAGAAAGAAAGTGGAAAGTCATCCGTTTTGCTCGATGTTAAGCCTTGGGATGACGAAACAGACATGAAGAAGTTGGAAGAGGCTGTTCGTAGCATTCAGATGGAGGGTCTACTCTGGGGAGCATCCAAACTGGTTCCGGTTGGATACGGCATCAAGAAGTTACAGATCATGATGACTATTGTTGATGACCTTGTGTCTGTAGACTCCCTCATCGAGGAGCATCTCACCGTTGAGCCAGTCAACGAGTATGTCCAGAGCTGTGACATTGTTGCATTCAACAAAATCTAA 669 0.4828 MAVTFSDLHTESGLKTLDEFLSGKTYVSGDQLTKDDIKVYGFVSEKPGSSFPSAAKWYDVVSSHLAASFPGKAQGVKFAGQGAPAEAAPAKPAAAAADDDDLDLFGDETEEDKKAAEEREAAKKTAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIQMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEEHLTVEPVNEYVQSCDIVAFNKI 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120837g00033 222 Pfam EF-1 guanine nucleotide exchange domain 135 222 IPR014038 GO:0003746|GO:0006414
Stsc120837g00033 222 FunFam Elongation factor 1-beta 1 like 127 222 - -
Stsc120837g00033 222 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 98 106 IPR001326 GO:0003746|GO:0005853|GO:0006414
Stsc120837g00033 222 SMART EF1_GNE_2 133 222 IPR014038 GO:0003746|GO:0006414
Stsc120837g00033 222 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 211 222 IPR001326 GO:0003746|GO:0005853|GO:0006414
Stsc120837g00033 222 SUPERFAMILY GST C-terminal domain-like 10 66 IPR036282 -
Stsc120837g00033 222 Gene3D - 126 222 IPR014717 -
Stsc120837g00033 222 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 222 - -
Stsc120837g00033 222 CDD EF1B 131 222 IPR014038 GO:0003746|GO:0006414
Stsc120837g00033 222 SUPERFAMILY eEF-1beta-like 130 222 IPR036219 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120837g00033 Stsc-Chr120837 183762 185874 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120837g00033 1 222 Eukaryotic Initiation Factors Gene Family AT5G12110 75.000 1.17e-107 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120837g00033 K03232 - rcu:8268814 311.997