Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120837g00029 ATGAAAGGATCATCATCATCACCATCAGAGAGAGTGATAAAGGTAGAAGAAAAAACTGAAGAGACAATGGAACATGAAAAACCGGTTGTTATTACTACGCCACCGATGCGCGAGTGCGAGTTTTGTGGGAAGAAATTCAGCTCAGGAAAAGCCCTTGGTGGCCATAAGAGATTCCATCTTCAACTTCTAAGAAAGGAGAAGGAATTAGCTGAAAAGTTGGCGGCCGCAGACGAAGGTGGTGGCGGCAGCGGCAGCGGCAGCGGCAACACGAAATTACTGTCCTCGTTGGATTCTCTTCCTAACGAGAAGCTAATTTGCTGTCTTTGCAACAAAGAATTTCCGTCGGAGAAGTCGTTATTCGGACACATGAGATCTCACCCTGGAAGAGAATGGAGGGGTGTTCACCCTCCAAGCACTGAAGGCGACGATGATGAAGCCGTGCTTCCATCATCGTCGCCTTCAATTGATGTGGCAAAATCTTTGCCACGATCTTGGTCGAGGACCGGAATTCGAGGCAGGGAGGGCATTTTCGATGCGATTCTTGGAGGCATTGTTGCTATTATGGTTGAAAAAGGTCATCAGGAGAACAAAGGAAGAGAACAAGAGGAGGGTAATTTGGTCAAAGAAGAGCAGAATTTGAAGAAGAAGAAAAGAGTATTATCTGATAACGACGAGGTTACAACTAGTATGAAGAACAGAAAGCTGATAGTGAGACTCAAGACTCGTCCCCATCTCGAAGAAGATATCGTCGGCGACCGCGACTGTGACGGAGGAATACCGGCTGAAGAAGGGTTTAAATGTAAGATTTGTGAGAAGTATTTTGCAACATTTCAAGCCCTAAGAGGACATAGGTCAAGCCACAACAAAGAGAAGAAAAGCAAGAGTCATGGTGATGGTGAAGAACAATTAAAGACTTCAGAGAATATTACAGAAGAATCAATAAGTGAACCTGCTAGTTCAAATAAAGTGCTAAGAGGGTTTGATTTGAATGAGCCACCAGAGAATAATAATATGGAAGATGGAACATGTTAG 1032 0.4419 MKGSSSSPSERVIKVEEKTEETMEHEKPVVITTPPMRECEFCGKKFSSGKALGGHKRFHLQLLRKEKELAEKLAAADEGGGGSGSGSGNTKLLSSLDSLPNEKLICCLCNKEFPSEKSLFGHMRSHPGREWRGVHPPSTEGDDDEAVLPSSSPSIDVAKSLPRSWSRTGIRGREGIFDAILGGIVAIMVEKGHQENKGREQEEGNLVKEEQNLKKKKRVLSDNDEVTTSMKNRKLIVRLKTRPHLEEDIVGDRDCDGGIPAEEGFKCKICEKYFATFQALRGHRSSHNKEKKSKSHGDGEEQLKTSENITEESISEPASSNKVLRGFDLNEPPENNNMEDGTC 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120837g00029 343 MobiDBLite consensus disorder prediction 120 155 - -
Stsc120837g00029 343 Gene3D Classic Zinc Finger 37 126 - -
Stsc120837g00029 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Stsc120837g00029 343 SUPERFAMILY beta-beta-alpha zinc fingers 105 287 IPR036236 -
Stsc120837g00029 343 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Stsc120837g00029 343 ProSitePatterns Zinc finger C2H2 type domain signature. 267 287 IPR013087 -
Stsc120837g00029 343 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 22 78 IPR044653 GO:0003700
Stsc120837g00029 343 Coils Coil 199 219 - -
Stsc120837g00029 343 SMART c2h2final6 104 126 IPR013087 -
Stsc120837g00029 343 SMART c2h2final6 265 287 IPR013087 -
Stsc120837g00029 343 SMART c2h2final6 37 59 IPR013087 -
Stsc120837g00029 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 265 292 IPR013087 -
Stsc120837g00029 343 Gene3D Classic Zinc Finger 257 322 - -
Stsc120837g00029 343 MobiDBLite consensus disorder prediction 11 27 - -
Stsc120837g00029 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 59 IPR013087 -
Stsc120837g00029 343 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Stsc120837g00029 343 MobiDBLite consensus disorder prediction 291 307 - -
Stsc120837g00029 343 MobiDBLite consensus disorder prediction 120 142 - -
Stsc120837g00029 343 MobiDBLite consensus disorder prediction 1 28 - -
Stsc120837g00029 343 MobiDBLite consensus disorder prediction 281 343 - -
Stsc120837g00029 343 Pfam C2H2-type zinc finger 265 289 - -
Stsc120837g00029 343 Pfam C2H2-type zinc finger 105 127 - -
Stsc120837g00029 343 Pfam C2H2-type zinc finger 38 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120837g00029 Stsc-Chr120837 171275 172306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120837g00029 39 137 C2H2 Transcription Factor Family AT2G26940 36.290 1.23e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc120837g00029 zf-C2H2_6 5.1e-08 CL0361