Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120837g00028 ATGTCGCCGTCCTCGTCGTCGTCCATGTCATTGCCCACAAAATGGGCCTGCAAGCATTGCAATAGAAAATTCAATTGTGGAAGAGCTTTAGGGGGTCATATAAGAAGTCATAATACCAAAATTAGATTCTCCAACAACAACAAGAAGCCACCAAGAACAACAAGAAGAAAGAGAAATAATAATAATAATAATCACTTATTATTATTAAGTTGGAAGGTTCACAAGAAGAGAGGAAGCAACCAACCACGAGTAGAAGTGGAAGAAGAAGAAAGCAAGAGGCCAAAGACACAAGAAAATGCTGATGATGATCATCATGAAGTTGAAGAAGAAGATGAAGATCAAGAAGATAAGAAAAGTTTGTTAGAGAGGCTGAAAGAATTTGATGAAGCAGGGCACAAGATTTCAAGGATGATTAGAGAAAGGTATGTTTGTCACACTTGCAATATGGTGTTCCCAACATTTCATGCAGTGAGGTGCCATGTTCATAATCCATTGTCACCACCACCAACAACCACCGAGGATGATGATAACAATAAAGCTGGTAAGTTAGTTATTAATAATACTGCTAATGAACATGTCAATAATAATGGAGTATTGGTCAATAATAATAATCATAATCATAATAATAATCCTCTTACTAGAATGTTAGATTTTGATCTCAATGAGTTGCCTCCTGTGGAGGAAGATAAATCATAA 696 0.3621 MSPSSSSSMSLPTKWACKHCNRKFNCGRALGGHIRSHNTKIRFSNNNKKPPRTTRRKRNNNNNNHLLLLSWKVHKKRGSNQPRVEVEEEESKRPKTQENADDDHHEVEEEDEDQEDKKSLLERLKEFDEAGHKISRMIRERYVCHTCNMVFPTFHAVRCHVHNPLSPPPTTTEDDDNNKAGKLVINNTANEHVNNNGVLVNNNNHNHNNNPLTRMLDFDLNELPPVEEDKS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120837g00028 231 MobiDBLite consensus disorder prediction 78 102 - -
Stsc120837g00028 231 Gene3D Classic Zinc Finger 4 70 - -
Stsc120837g00028 231 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 42 IPR013087 -
Stsc120837g00028 231 MobiDBLite consensus disorder prediction 37 117 - -
Stsc120837g00028 231 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 10 229 IPR044653 GO:0003700
Stsc120837g00028 231 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120837g00028 Stsc-Chr120837 168848 169543 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc120837g00028 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120837g00028 - - ccaj:109809633 69.3218