Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120837g00027 ATGTCTACAACGCCGCCATTATTAGAAGGAGGAGGAGGAGAAGATGTTAAAAAACGTAAATGGACAAGCGAAGAGGATCAAATTCTTTTAGATTCCGTAAACAATCATGGAGCGATGGATTGGAATGCTGTTGAGACGAATTCAGGGCTTAAACAACGCAGTGCCCAGAGTTGTCGTCAAAGATGGAGGTATTACTTGAACCCAAATCTGAAGAAAGGTGCATTAACTCATGAAGAAATTCAGAAAATCTGTCAGTTCTATCATTTTCATGGAAACAAGTGGGCCAAAATATCTAAACAGTTGCCGGGGCGTACGGACAATGAAATAAAGGCCTTTTGGAACAATAGGAAAAGGAAATTGGAGAGATCTGGTTTACCATTATACCCTCCTGAAATCCTGAATGGAAATAATGGAAACCATGAAGGTGTTGGTGGTGTGAATAGTAATTGCAGCAGCAACAATGATGGTGAAGGAAAAAGTTCAGAATCAAATCAATTGCCATCAGAAATGCTTCAATCACCACCACAATCAGATAATATGGAGATATCAGGCAACAAAATTAATATTGATTTGAACATTCCTTATGTGGATCAGAGTGATGTTCCAACTCAGAATGATGATGATGATGATGGCAGCCACAATGAAGATGATGATGATAATGGTGAAGGAAAAGCTTGTGATGATGATGCAACTACCGGTGTATCAAAAAGTTCAGAATCAAATGAATTGCCATTAGAAATGCTTCAATCACCACCAGAATCAGATAAGGAGATATCAGGCAACAACAATATTGATTTGAACATTCCTTATGTGGATCAGAGTGATGCTCCAACGCAGAATGATAATGATGACAGCAACAATGAAGATGATGATGAACGAAAAGCTTGTGATGATGATGCAACTACTGGTGTATCAAAAAGTTTAGAATCAAATGAATTGCCATCAGAAATGGTTCAAATGAATTGCCATCATATTGATTTGAACATTCCTTATCTTGATCTGCAGAGTGATGCTCCAACACAGAATGATAATGATCATCAGAGGCACAGGCGTCATGAATACTTTGATAGCATTACAACTAGACTCATTCAACAACAATGGCAGCAGCAAGATTATCATCACATGTATGTTGATGAGCAACTTGATGATTTGCTGTCAAAGATTATTCCTTCACTCCAAATTACAGAAACACCCCCACCACCACTTCTTTCTCAGCCACAAGCAACAGCTGATGATTCATATTTGAAAGGCTCGAATAGCAGCATTCCTTTGGAGACAGATCAATGGGGTGGTCCTTATTATAATGATGATAACTATGGTGATCTTCTTCAATATATGATTGAAAAAAGAGTCATCGTCTTCGTCATGTCTCCGTCGCCATCAGAAGGAGAAGATTTCAAGAAAGGTCCATGGACGAGCGAAGAGGATGAAATTCTTGCAGATTATGTAAAGAATCATGAAGCCAAGAATTGGAATGCTGTTGAGAAGAATTCAGGGCTTCAACGCAGTGGCAAAAGTTGTCGTTTAAGATGGACCAATCACTTGAACCCAAGTCTTAATAGAGGTGAATTAACTGATCAAGAAATTCATAAAATCATTCAGCTCCATTATACTCATGGAAACAAGTGGGCCAAAATAGTTAAAGAGTTGCCGGGGCGCACGGACAATGACATAAAGAACTTCTGGCACACAAGGAAAAGGAAATTGGAGAGATCTGGTTTACCATTATACCCTCCTGAAATCCAGAATGGAAATCATGGAAACCATGAAGAAGGAGTTGCTGGTGTCAATGGTAATGATAATGGTGATGAAGGAAAAAGTTCAGAATCAAAAGAATTGCCATCACAAATAATGCTTCAATCACCACCACCGCCACCACCAATGCTGCTTCCACAATCTGAAAACAATTTGAACACTACTCATCAGATTGTTGCTCCAACACAGAATAATAATAATGATCAGAGGCGCAGGGCTTACTTTGATGCCAGAAATGCAAATTCAATATCTGAAGCATCCCTTGGCATACCAGTGCACCCTCTTAGCATAACCCATAATAATGGTAGTGCTACAACTAGAGTGATTTTTCAACAACAGCAGCAACATCGTCATCATCCGTATCACGGTAAGGTTTACAGGAACTCTTGTGAGGGCAATTATAAAGCAAGTAATAGTTATGGTGTTACACAACAACCTGGCCTATCAATGCACCCTCGGAACATCAACGGAGCTCCCTCACAGTTTCAGCAACATACATATCAAAGTGGAGCTTTCAATGTACCACCGCGGCCACCACTGTCGTCGCCGCCACCACTGATAGCGCCACTGCCGCGGCCACCTTCATCAACAGATTCAGTCTTGGTCACCATTCCTATTCACAATAGGTATCATGGTGGGGCTTATAAGAACCTTTGTTATGGGAATAATGAAGCAAGTACTTCCTATGGTGTTACGCAACAATCTGGCCTATCAGTGCAAACTCAGAACATCAACGGTGCTCCCTCACAATTCCAACATACATATCAAAATGGAGGTTATGTACCACCGTCGTCACCACCACTACTGCCACCACTGTCGCCACCACCGCTCTCGTCGTCACCACCACTGTCACCACTAGCATTGTCGCCACTGCTGCCACCATCATCATCAACGGATTCAGATATTTACAATAGCTTGCCCGTCATTTGCAATGTTGATGAAATGGATGATGATGGTGCCACATTTGAGGAGAAGAAATGTGATGAACTGTCAAAGATATTTACTCCTTCTAATGATGATCATAACAATAATCAGAATAACAACAACAATGCATGTTCTAATTCATCATCAAGTGATGGCATGAAAGATGAGCTTCCTTCACTCCAAATTACAGAAACACCCCCACCCCCACCACCATCACCACTTCTTCCTCAGCCACAAGCAACAGCTGATTCTAATTTGGAAGGCTCCAATGATAGCATTATTATTCCTTTGGAGACAGATCAATGGGGTGGTCCTTATAATGAGTATAACTATGGTGATCTTTGTCCAGATTTGTTGGACGATCATTTCTTTGATGGCATACCAGAGATATGA 3072 0.4076 MSTTPPLLEGGGGEDVKKRKWTSEEDQILLDSVNNHGAMDWNAVETNSGLKQRSAQSCRQRWRYYLNPNLKKGALTHEEIQKICQFYHFHGNKWAKISKQLPGRTDNEIKAFWNNRKRKLERSGLPLYPPEILNGNNGNHEGVGGVNSNCSSNNDGEGKSSESNQLPSEMLQSPPQSDNMEISGNKINIDLNIPYVDQSDVPTQNDDDDDGSHNEDDDDNGEGKACDDDATTGVSKSSESNELPLEMLQSPPESDKEISGNNNIDLNIPYVDQSDAPTQNDNDDSNNEDDDERKACDDDATTGVSKSLESNELPSEMVQMNCHHIDLNIPYLDLQSDAPTQNDNDHQRHRRHEYFDSITTRLIQQQWQQQDYHHMYVDEQLDDLLSKIIPSLQITETPPPPLLSQPQATADDSYLKGSNSSIPLETDQWGGPYYNDDNYGDLLQYMIEKRVIVFVMSPSPSEGEDFKKGPWTSEEDEILADYVKNHEAKNWNAVEKNSGLQRSGKSCRLRWTNHLNPSLNRGELTDQEIHKIIQLHYTHGNKWAKIVKELPGRTDNDIKNFWHTRKRKLERSGLPLYPPEIQNGNHGNHEEGVAGVNGNDNGDEGKSSESKELPSQIMLQSPPPPPPMLLPQSENNLNTTHQIVAPTQNNNNDQRRRAYFDARNANSISEASLGIPVHPLSITHNNGSATTRVIFQQQQQHRHHPYHGKVYRNSCEGNYKASNSYGVTQQPGLSMHPRNINGAPSQFQQHTYQSGAFNVPPRPPLSSPPPLIAPLPRPPSSTDSVLVTIPIHNRYHGGAYKNLCYGNNEASTSYGVTQQSGLSVQTQNINGAPSQFQHTYQNGGYVPPSSPPLLPPLSPPPLSSSPPLSPLALSPLLPPSSSTDSDIYNSLPVICNVDEMDDDGATFEEKKCDELSKIFTPSNDDHNNNQNNNNNACSNSSSSDGMKDELPSLQITETPPPPPPSPLLPQPQATADSNLEGSNDSIIIPLETDQWGGPYNEYNYGDLCPDLLDDHFFDGIPEI 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120837g00027 1023 Gene3D - 13 72 - -
Stsc120837g00027 1023 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 520 570 IPR017930 -
Stsc120837g00027 1023 MobiDBLite consensus disorder prediction 127 183 - -
Stsc120837g00027 1023 Pfam Myb-like DNA-binding domain 471 530 - -
Stsc120837g00027 1023 Pfam Myb-like DNA-binding domain 21 82 - -
Stsc120837g00027 1023 MobiDBLite consensus disorder prediction 140 183 - -
Stsc120837g00027 1023 MobiDBLite consensus disorder prediction 202 224 - -
Stsc120837g00027 1023 CDD SANT 76 117 IPR001005 -
Stsc120837g00027 1023 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Stsc120837g00027 1023 Gene3D - 75 135 - -
Stsc120837g00027 1023 Gene3D - 523 590 - -
Stsc120837g00027 1023 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Stsc120837g00027 1023 CDD SANT 20 66 IPR001005 -
Stsc120837g00027 1023 MobiDBLite consensus disorder prediction 918 982 - -
Stsc120837g00027 1023 ProSiteProfiles Myb-like domain profile. 516 566 IPR001005 -
Stsc120837g00027 1023 MobiDBLite consensus disorder prediction 833 868 - -
Stsc120837g00027 1023 MobiDBLite consensus disorder prediction 231 247 - -
Stsc120837g00027 1023 CDD SANT 470 515 IPR001005 -
Stsc120837g00027 1023 ProSiteProfiles Myb-like domain profile. 463 515 IPR001005 -
Stsc120837g00027 1023 MobiDBLite consensus disorder prediction 577 625 - -
Stsc120837g00027 1023 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 463 519 IPR017930 -
Stsc120837g00027 1023 Gene3D - 467 520 - -
Stsc120837g00027 1023 MobiDBLite consensus disorder prediction 921 949 - -
Stsc120837g00027 1023 MobiDBLite consensus disorder prediction 848 868 - -
Stsc120837g00027 1023 CDD SANT 525 566 IPR001005 -
Stsc120837g00027 1023 MobiDBLite consensus disorder prediction 955 970 - -
Stsc120837g00027 1023 FunFam MYB-related transcription factor 467 520 - -
Stsc120837g00027 1023 MobiDBLite consensus disorder prediction 254 281 - -
Stsc120837g00027 1023 SMART sant 17 68 IPR001005 -
Stsc120837g00027 1023 SMART sant 467 517 IPR001005 -
Stsc120837g00027 1023 SMART sant 71 119 IPR001005 -
Stsc120837g00027 1023 SMART sant 520 568 IPR001005 -
Stsc120837g00027 1023 ProSiteProfiles Myb-like domain profile. 13 66 IPR001005 -
Stsc120837g00027 1023 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 66 IPR017930 -
Stsc120837g00027 1023 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 459 780 - -
Stsc120837g00027 1023 SUPERFAMILY Homeodomain-like 466 562 IPR009057 -
Stsc120837g00027 1023 MobiDBLite consensus disorder prediction 197 313 - -
Stsc120837g00027 1023 SUPERFAMILY Homeodomain-like 15 113 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120837g00027 Stsc-Chr120837 159011 167163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120837g00027 463 581 MYB Transcription Factor Family AT5G55020 62.185 5.18e-45 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc120837g00027 Myb_DNA-bind_6 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120837g00027 K09422 - cave:132186575 178.718