LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120837g00021	ATGGCGATTGCAGCCCCAGGGCAACTGAACGTGAACGAATCCCCTTCTTGGGGATCCAGAAGCGTCGATTGCTTCGAGAAGTTGGAGCAAATTGGCGAAGGCACATACGGTCAAGTTTACATGGCTAAAGAGATTAAAACTGGCGAAATCGTTGCTCTGAAGAAAATTCGAATGGACAATGAGAGAGAAGGGTTTCCTATAACTGCTATACGAGAAATCAAAATTCTTAAGAAACTACACCATGAAAATGTGATCAAGCTCAAGGAAATTGTCACTTCTCCAGGCCCTGAGAAAGATGAACAAGGGAGGCCAGATGGTAACAAATATAAAGGGGGCATCTATATGGTCTTTGAATACATGGATCATGATTTGACTGGTCTTGCTGATCGTCCTGGGATGAGATTTACAGTTCCACAAATTAAGTGTTACATGAGACAGCTGTTGACGGGCCTTCACTATTGTCATGTAAATCAAGTACTTCATCGTGATATTAAAGGAAATCTGAAGCTTGCAGATTTTGGACTGGCACGGTCATTTTCTAATGATCACAATGCAAATCTTACAAATCGTGTCATTACGTTATGGTACAGACCCCCTGAGTTGCTGCTAGGGACAACAAAGTACGGGCCAGCTGTAGATATGTGGTCTGTGGGGTGCATTTTTGCTGAACTTCTTCATGGGAAACCTATCTTTCCTGGAAAAGATGAGCCTGAACAACTGAATAAAATATTTGAGCTGTGTGGAGCACCGGATGAGGTGAACTGGCCTGGGGTTTCCAAGACTCCTTGGTATAATCAATTTAAACCAACAAGGCCAATGAAACGACGGCTGAGAGAAGTTTTCAGGCATTTTGATCGTCATGCTCTGGAATTGTTGGAGAGGATGCTGACACTTGATCCAGCTCAGAGAATTACTGCGAAGGATGCTCTTGATGCTGAGTATTTCTGGACTGATCCATTGCCATGTGACCCAAAGAGTTTACCCAAGTATGAGTCATCACATGAGTTTCAGACAAAGAAAAAGCGTCAGCAACAACGGCAAAATGAAGAAATGGCCAAGCGCCAGAAAATGCAGCATCCCCAGCAGCACACGCGTCTCCCACCCATTCAACAGGCAGGGCAACATGCACAAATGCGATCAGGACCTAACCAAAATATACATGGCTCTCAACCCCAAGTTGCTGCGGGACCCAGTCACCATTATGGGAAGCCTCGAGGTCCATCTGGTGGGCCAGGAAGATATCCACAAAGCGGGAACCCTGGTGGAGGATACAATCACCCTAATCGTGGAGGTCAAGGAGGGGGTGGATATGGCAGCGGGCCTTATCCTCCTCAAGGGCGAGGGGCACCTTACGGTTCCAGCGGTATGCCTGGTGGTGGTCCTCGCGGAGGAGGTGGTAGTGGCTATGGAGTCGGAGCCCCAACGTATCCCCAGCAAGGTGGTCCATACGGTGGATCTGGCACTGGTCGTGGCTCAAACATGATGGGTGGAAACCGCAATCAACAATACGGATGGCAGCAATGA	1524	0.4744	MAIAAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPTRPMKRRLREVFRHFDRHALELLERMLTLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEEMAKRQKMQHPQQHTRLPPIQQAGQHAQMRSGPNQNIHGSQPQVAAGPSHHYGKPRGPSGGPGRYPQSGNPGGGYNHPNRGGQGGGGYGSGPYPPQGRGAPYGSSGMPGGGPRGGGGSGYGVGAPTYPQQGGPYGGSGTGRGSNMMGGNRNQQYGWQQ	507

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc120837g00021	507	MobiDBLite	consensus disorder prediction	328	357	-	-
Stsc120837g00021	507	FunFam	Cyclin-dependent kinase C-2	122	355	-	-
Stsc120837g00021	507	MobiDBLite	consensus disorder prediction	326	507	-	-
Stsc120837g00021	507	FunFam	Cyclin-dependent kinase C-2	12	121	-	-
Stsc120837g00021	507	CDD	STKc_CDK9_like	25	315	-	-
Stsc120837g00021	507	MobiDBLite	consensus disorder prediction	361	392	-	-
Stsc120837g00021	507	Gene3D	Transferase(Phosphotransferase) domain 1	122	355	-	-
Stsc120837g00021	507	PANTHER	CELL DIVISION PROTEIN KINASE	23	321	-	-
Stsc120837g00021	507	Gene3D	Phosphorylase Kinase; domain 1	12	121	-	-
Stsc120837g00021	507	SUPERFAMILY	Protein kinase-like (PK-like)	19	323	IPR011009	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120837g00021	Stsc-Chr120837	127913	131861	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc120837g00021	1	507	Core Cell Cycle Gene Families	AT5G10270	77.011	0.0	770

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Stsc120837g00021		Pkinase	6.3e-65	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc120837g00021	K08819		-	gmx:100793565	851.277

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