Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120837g00020 ATGGGAAATTGCTTCATAAAACCAGTTGCTAATGTTTCTTCCACAAGCCTCTTTGGAAGTAATAACTCTAAATCAAAGCCAAAGCCGGATTCAAGTCCTCCCAAACAAAGATCTTCTTCTCAAACTTCAGTGCCAAATGTTATTGAGAGATCAATTTCCAGTACCCTGAAGTCCTTCACCTTTAGTGAGCTTAAGGAGGCAACTAAGAACTTCCGGCGAGAAAATTTGATCGGCGAGGGTGGGTTCGGGTTTGTCTACAAAGGTTGGATAGATGAGAACACTCTTGCTCCCACAAAGGCAGGGAGTGGGATAGTAGTAGCCATAAAGAAGCTTAAGCCAGAAAGCTTTCAAGGCCACAAAGAATGGCTAGCAGAAGTGAACTATCTAGGGCAGGTTCACCATGAAAATCTTGTAAAACTCATTGGTTATTGCTTGGAAGGGAAGAATAGGCTTCTAGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAAAACCATTTATTCAGAAAAGGTGTTCAACCGATACCATGGATTATGAGGATCAACATCGCGATTGCTGTTGCGAGAGGATTAGCATACTTGCATTCCCTCGATTCGAATATCATTTTTCGCGATTTAAAGGCTTCCAATGTCCTACTTGACTCGGATTTCAATGCGAAGATTTCAGATTTCGGCTTGGCAAGAGACGGTCCTACCGGAGATAACACACATGTTTCGACCAGAGTTATCGGAACTCATGGTTATGCTGCACCAGAGTATGTAGCTACAGGTCATTTGACCCCAAGAAGTGATGTATACAGCTTTGGTGTTGTCTTGCTAGAGTTATTAACCGGCAGGCGCGTGGTTGAAGAAGAAAAAGAAGGAGTTCCAGAGGAAACATTGGTGGATTGGGCGAGGCCATTCCTTGGCGATAGCCGCAGGATTTTGAGAATCATGGATACAAAGTTGGGTGGACAGTACTCAAGGAAAGGAGCTCAAGCCGCGGCCGCACTCGCCTTGCAATGCCTGAATGCTGATCCAAAGTATAGGCCACAAATGGTGAATGTCTTAGCTGCATTGGAAGCACTTCAATCCTCAAATTCAATCACAAGGACCCCAAAAAGGGCAACTGAGGGTAGCAGTGCAAGCAGCAAGCATTCTTCCAATCATTCCCAAAAGTCATTTTCAAGTGCTGAAAAACTATGA 1182 0.4391 MGNCFIKPVANVSSTSLFGSNNSKSKPKPDSSPPKQRSSSQTSVPNVIERSISSTLKSFTFSELKEATKNFRRENLIGEGGFGFVYKGWIDENTLAPTKAGSGIVVAIKKLKPESFQGHKEWLAEVNYLGQVHHENLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFRKGVQPIPWIMRINIAIAVARGLAYLHSLDSNIIFRDLKASNVLLDSDFNAKISDFGLARDGPTGDNTHVSTRVIGTHGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRVVEEEKEGVPEETLVDWARPFLGDSRRILRIMDTKLGGQYSRKGAQAAAALALQCLNADPKYRPQMVNVLAALEALQSSNSITRTPKRATEGSSASSKHSSNHSQKSFSSAEKL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120837g00020 393 ProSiteProfiles Protein kinase domain profile. 71 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120837g00020 393 PANTHER OS01G0588500 PROTEIN-RELATED 34 356 - -
Stsc120837g00020 393 FunFam PTI1-like tyrosine-protein kinase 3 157 365 - -
Stsc120837g00020 393 Gene3D Transferase(Phosphotransferase) domain 1 157 379 - -
Stsc120837g00020 393 SMART serkin_6 71 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120837g00020 393 FunFam Serine/threonine-protein kinase BIK1 37 156 - -
Stsc120837g00020 393 MobiDBLite consensus disorder prediction 15 45 - -
Stsc120837g00020 393 SUPERFAMILY Protein kinase-like (PK-like) 36 352 IPR011009 -
Stsc120837g00020 393 Pfam Protein tyrosine and serine/threonine kinase 74 350 IPR001245 GO:0004672|GO:0006468
Stsc120837g00020 393 Gene3D Phosphorylase Kinase; domain 1 46 156 - -
Stsc120837g00020 393 CDD STKc_IRAK 77 355 - -
Stsc120837g00020 393 MobiDBLite consensus disorder prediction 360 393 - -
Stsc120837g00020 393 ProSitePatterns Protein kinases ATP-binding region signature. 77 110 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120837g00020 Stsc-Chr120837 125130 127580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120837g00020 19 352 Glycoside Hydrolase AT3G07070 46.313 7.54e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc120837g00020 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120837g00020 - - gmx:102664409 580.482