Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120837g00012 ATGGGTTTTCAGACTATGGGTTCTCAGAGTAATGGGCAACAGTCTCATTTACAGCCACCACAGTTATCTAGGCAAGGTTCATGGTATAGTCTCACACTTGATGAGGTTAATAGTCAGCTAGGGGACTTGGGGAAGCCGATGGGGAGCATGAACCTCGACGAGCTTCTCCAAAATGTATGGACTGCCGAGGCGAGTAAGGTTGTTGGGGTACAGAATGAGCAGATGTCGTCGTCGTCTTCCCTTCAACGCCAGGCCAGTCTCACACTGGCCCGTGCGTTGAGTGGGAAGACGGTTGACGATGTTTGGAAAGAAATCCAACAGGGGCAAAAGAAACGATATGGAGACAGTGTTAAAATTGAGGGCGGAGAAATGACTTTTGGCGAAACAACATTAGAGGACTTTCTAGTACAAGCAGGGCTATTTGCTGAAGCTTCTGTTAGTCCAAATGTGGGGTTGAATAGAATGGATTCTGCCACTGCGCAAAGTTTACAGCAAAAATCAGGCGTGTCGCCCTCCCCTTCAGTTAGCAGTTTGTCGGACACAAGACCGGGTCGCAAAAGGGATGCTCCAGATGCATATGAGAAAGCTTTGGAAAGGAGGCTGAGAAGGAAAATCAAGAACAGGGAATCTGCAGCACGCTCACGGGCAAGAAAACAGGCATATCATAATGAATTGGTTACCAAGGTTTCTCGACTAGAAGAAGAAAATGTAAAGCTCAAGAAAGAGAAGGAATTCGAAGAGAAGCTACCATCTGAATCACCATCCGAACCGAAATATCAGCTTCGAAGAATAAGTTCTGCCTTTTTCTGA 810 0.4654 MGFQTMGSQSNGQQSHLQPPQLSRQGSWYSLTLDEVNSQLGDLGKPMGSMNLDELLQNVWTAEASKVVGVQNEQMSSSSSLQRQASLTLARALSGKTVDDVWKEIQQGQKKRYGDSVKIEGGEMTFGETTLEDFLVQAGLFAEASVSPNVGLNRMDSATAQSLQQKSGVSPSPSVSSLSDTRPGRKRDAPDAYEKALERRLRRKIKNRESAARSRARKQAYHNELVTKVSRLEEENVKLKKEKEFEEKLPSESPSEPKYQLRRISSAFF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120837g00012 269 Pfam bZIP transcription factor 199 244 IPR004827 GO:0003700|GO:0006355
Stsc120837g00012 269 SMART brlzneu 195 267 IPR004827 GO:0003700|GO:0006355
Stsc120837g00012 269 SUPERFAMILY Leucine zipper domain 199 245 IPR046347 GO:0003700|GO:0006355
Stsc120837g00012 269 Coils Coil 222 249 - -
Stsc120837g00012 269 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 197 242 IPR004827 GO:0003700|GO:0006355
Stsc120837g00012 269 MobiDBLite consensus disorder prediction 159 223 - -
Stsc120837g00012 269 MobiDBLite consensus disorder prediction 1 24 - -
Stsc120837g00012 269 MobiDBLite consensus disorder prediction 181 205 - -
Stsc120837g00012 269 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 202 217 IPR004827 GO:0003700|GO:0006355
Stsc120837g00012 269 Gene3D - 197 249 - -
Stsc120837g00012 269 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 22 267 IPR043452 GO:0003700|GO:0045893
Stsc120837g00012 269 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 197 249 - -
Stsc120837g00012 269 MobiDBLite consensus disorder prediction 159 180 - -
Stsc120837g00012 269 CDD bZIP_plant_BZIP46 199 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120837g00012 Stsc-Chr120837 55536 59368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120837g00012 22 269 bZIP Transcription Factor Family AT3G56850 46.479 5.60e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc120837g00012 bZIP_1 1e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120837g00012 K14432 - gmx:100798549 392.504