Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120837g00011 ATGGCCAAGAAGCGAAAGGTTCGACCCTCCGAACCCGAACCACCCAAACAAGAGCAAGAGCAAGAGCTTCCCCCCCAGCAACAACAGCCACCACACGAAGAACTAACCATAGATCAACAACAAAGCATGGCCGTCGATGACGCCGTGCCACAACAAGACCAACCTCAAAACGACGTCGTAATACAAGAAGAACAAAACAACGAAGGCGAAGGAGAAGGGGACGAAGAACAACAACAGCAACAGGAGGATCAGCAGCAACCACATCAAGAAGGAGGGGAAACCCTAGAAAGCCAAGAAGCGCAGATTCAACAGCAGGCTTCAGGTTCGGATTCGGTTCGGGCCGAAGCTAACGGCTCCGAGCAGCAGCAGGAAGAGGAGGACCTCGATTTGGAAGACGAGCCAATCGAGAAGCTTCTAGAACCTTTCACGAAGGAGCAGCTGTACTCCCTTGTGAAGCAAGCCGTCGAGAAGCACCCCGATTTCTCCGAAACCGTTCGCCAGCTGGCAGATGTGGACCCCGCACACCGGAAGATCTTCGTCCATGGCCTTGGTTGGGACACTACTGCAGAAACTCTAACCGCCGTATTCGGGAAATACGGCGAAATCGAAGACTGCAAGGCCGTGACGGACAAAATCTCCGGAAAATCGAAGGGATACGCGTTCATCCAATTCAAGCACCGCGCCGGGGCGAGAAGGGCGCTTAAGCAGCCTCAGAAGAAGATTGGGAACAGAACAACTTCGTGCCAATTGGCCTCCGCGGGACCAGTTCCGGCGCAGCAGGCGGTCGCAGCGGGTGCTCCGGTTGTGTCGGAGTATACACAGAGGAAGATCTTTGTTAGCAATGTGAGCGCAGAGATTGATCCTCAGAGGCTTCTGGAATTCTTCAGACAGTTCGGGGAGATTGAGGATGGGCCTCTAGGGATTGACAAGCAGACAGGGAAGCCGAAAGGGTTCGCTCTTTTCGTGTATAAAACAGTTGAGAGTGCTAAGAAGGCGTTGGAGGAGCCAAACAAGAACTTTGAAGGGCACACCCTTTATTGCCAGAAGGCCGTTGATGGTCCCAAAGGTNNNNNNNNNNACCATCAACAGCACTATCAGCACCAATCACATCACCATCATCAGGGTCACTTTCACAGGAAGGATAAGAACAAGTATTCGGCTGGTGGGCCTGCACATGGAGGTGGAGGTCACTTGATGGCGCCATCAGCTCCAGGGCCTGCTGTTGGAGGTTACAACCCTGGTGTGCCGCCTGCTGCTGCTGCGGCACAGGGTCTCAACCCTGCACTTGGGCAAGCTCTGACAGCATTGCTTGCTAATCAGGGTGCCGGATTGGGGCTTGGAAATCTTCTTGGAGGGATCGGCGGTGCTCCTGTGAACCAGCCTGGTCCGCCTGCCGGTGGATATGGGAGTCAGCCAGCTATGGGATATGGAAACCAGCCGGGGATGCAGCCGCAATACCAGAATCCACAGATGGGGCAGAGTAGTGGGGTTCGACCTCACCCCGGTGCTGGCGCGCCTTACATGGGTCATTAG 1533 0.544 MAKKRKVRPSEPEPPKQEQEQELPPQQQQPPHEELTIDQQQSMAVDDAVPQQDQPQNDVVIQEEQNNEGEGEGDEEQQQQQEDQQQPHQEGGETLESQEAQIQQQASGSDSVRAEANGSEQQQEEEDLDLEDEPIEKLLEPFTKEQLYSLVKQAVEKHPDFSETVRQLADVDPAHRKIFVHGLGWDTTAETLTAVFGKYGEIEDCKAVTDKISGKSKGYAFIQFKHRAGARRALKQPQKKIGNRTTSCQLASAGPVPAQQAVAAGAPVVSEYTQRKIFVSNVSAEIDPQRLLEFFRQFGEIEDGPLGIDKQTGKPKGFALFVYKTVESAKKALEEPNKNFEGHTLYCQKAVDGPKGXXXXHQQHYQHQSHHHHQGHFHRKDKNKYSAGGPAHGGGGHLMAPSAPGPAVGGYNPGVPPAAAAAQGLNPALGQALTALLANQGAGLGLGNLLGGIGGAPVNQPGPPAGGYGSQPAMGYGNQPGMQPQYQNPQMGQSSGVRPHPGAGAPYMGH 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120837g00011 510 MobiDBLite consensus disorder prediction 1 138 - -
Stsc120837g00011 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 345 IPR000504 GO:0003723
Stsc120837g00011 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 245 IPR000504 GO:0003723
Stsc120837g00011 510 MobiDBLite consensus disorder prediction 65 79 - -
Stsc120837g00011 510 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 77 361 - -
Stsc120837g00011 510 MobiDBLite consensus disorder prediction 365 380 - -
Stsc120837g00011 510 MobiDBLite consensus disorder prediction 80 118 - -
Stsc120837g00011 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 363 IPR000504 GO:0003723
Stsc120837g00011 510 SUPERFAMILY RNA-binding domain, RBD 271 364 IPR035979 GO:0003676
Stsc120837g00011 510 Gene3D - 269 397 IPR012677 -
Stsc120837g00011 510 Gene3D - 56 261 IPR012677 -
Stsc120837g00011 510 MobiDBLite consensus disorder prediction 476 495 - -
Stsc120837g00011 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 253 IPR000504 GO:0003723
Stsc120837g00011 510 MobiDBLite consensus disorder prediction 20 64 - -
Stsc120837g00011 510 MobiDBLite consensus disorder prediction 454 510 - -
Stsc120837g00011 510 SMART rrm1_1 177 249 IPR000504 GO:0003723
Stsc120837g00011 510 SMART rrm1_1 276 348 IPR000504 GO:0003723
Stsc120837g00011 510 MobiDBLite consensus disorder prediction 1 18 - -
Stsc120837g00011 510 MobiDBLite consensus disorder prediction 352 421 - -
Stsc120837g00011 510 SUPERFAMILY RNA-binding domain, RBD 167 254 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120837g00011 Stsc-Chr120837 48610 53037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120837g00011 274 354 C2H2 Transcription Factor Family AT2G19380 33.333 2.94e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120837g00011 K12741 - gmx:100792637 524.628