Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120836g00030 ATGGAGGCCAGGATGAGGAGGACAATAGTTGAGAAGATGAGGAAGGATAGCACAGTTGATGAGGTAGAAGAGGAGTTAGAAGAGGAAGATGAGAGTGGTGGTGGTGGTGATGCTGCAGGCCTTGCAGCAGAAGAAGAGAAGAAGAAAAGTTCTGTTGGAAGTGGAAGAAGAGGGTCAAATGGAGGAGGAGGAGGAGCAGGAGGAGTTTCTCCACCTTCCTGCCAGGCTGAGAGGTGTGGTGCTGACTTGTCTGAGGCCAAAAGGTACCATCGCCGCCATAAGGTTTGTGAGTTTCATTCCAAGGCACCTGTGGTGGTGGTTGCAGGGCTCAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCAGAATTTGATGAAGCCAAAAGAAGTTGCCGGAGGCGCTTGGCTGGACACAACGAGAGGCGCCGGAAGAGCAACATAGAGCCTTGCAACGAGGGAAGCGGCCGCGGCGGCAAAGGGCAGCCCTCTAAGGAAAGCCACTGCAGATCCGCCGACGATCGGGGAAGAACTCAGATGAACATTGCAGCAGGGAGCTCTGGCTACAAGTCATTCCATATCAGATGA 594 0.5354 MEARMRRTIVEKMRKDSTVDEVEEELEEEDESGGGGDAAGLAAEEEKKKSSVGSGRRGSNGGGGGAGGVSPPSCQAERCGADLSEAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNIEPCNEGSGRGGKGQPSKESHCRSADDRGRTQMNIAAGSSGYKSFHIR 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120836g00030 197 MobiDBLite consensus disorder prediction 1 20 - -
Stsc120836g00030 197 Pfam SBP domain 74 147 IPR004333 GO:0003677
Stsc120836g00030 197 SUPERFAMILY SBT domain 72 151 IPR036893 GO:0003677|GO:0005634
Stsc120836g00030 197 MobiDBLite consensus disorder prediction 1 77 - -
Stsc120836g00030 197 FunFam Squamosa promoter-binding-like protein 14 66 135 - -
Stsc120836g00030 197 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 40 165 IPR044817 GO:0003677
Stsc120836g00030 197 MobiDBLite consensus disorder prediction 139 197 - -
Stsc120836g00030 197 Coils Coil 12 32 - -
Stsc120836g00030 197 Gene3D - 65 135 IPR036893 GO:0003677|GO:0005634
Stsc120836g00030 197 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120836g00030 Stsc-Chr120836 207153 208315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120836g00030 55 173 SBP-box Gene Family AT1G53160 64.463 6.03e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc120836g00030 SBP 6.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120836g00030 - - aprc:113864686 226.098