Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120836g00023 ATGGACAGCTTCTACCACCACCACCACCACTTTGACAACACCGACACCCACTTGCCACCTGGCTTCCGATTCCACCCCACCGACGAAGAACTCATCACCTACTACCTTGTCAAGAAGGTTCTCGACAACACCTTCACCGGAAGAGCCATAGCTGAAGTTGACCTCAACAAGTGTGAGCCATGGGAGCTTCCTGAGAAAGCAAAGATGGGTGAGAAGGAATGGTACTTCTTCAGCTTGAGGGACAGGAAGTACCCAACTGGGTTAAGAACAAACAGAGCCACTGAAGCTGGGTACTGGAAAGCCACAGGCAAAGACAGAGAGATCTACAGCTCCAAGACATGTTCTCTTGTTGGCATGAAGAAGACACTTGTCTTCTACAGAGGTAGAGCTCCAAAGGGTGAGAAGAGCAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCCTACCATTATCTCTCTAGAAGCTCCAAGGATGAGTGGGTGATATCTCGTGTGTTCCAGAAGACAACCACCGGAGGTGGTGGCGGATCCGCCGTGTCAACCACCGCCGGAGGGTCAAAGAAGGCGAAAATGAGCACTTCAACCACCACTTCTGCAATGAGCTTCTGCCCTGAACCAAGTTCTCCCTCTTCGGTTTACCTTCCACCGCTTCTTGACTCTTCACCTTACACCACCGCCACCACCGGGTCCGTCACCTCCGCCGCCGCAGCATACGACGGCCGTCAGAGCTCCTTCGAAAACAACAACAACAATGAAACCACAAGGGAGCACGTGTCCTGTTTCTCCACAATCTCCAACAACTTCGTCAATGGGTTCTTCGATCTTGCTCCCATGGATTCCTTCGCTCGATTCCAAAGAAACAATAACAACAACAACAACAACAACAATGGTGTTTCTGCATTCCCAAGCCTAAGGTCCCTGCAAGATAACCTTCAACTTAACCCCTTGTTTTTCTCCTCCGCCGCGGCGGCGCCGCCATTCCACGGCGGCGAGTTTCACTCCGGCGGAACCTGGCCGGTGCCGGAGGACCAGAGGGTGTCTGAAACTGCTGCCGCCGGCATGGCTTTGGGACATTCCGAGCTTGATTGCATGTGGGGCTATTGA 1110 0.5252 MDSFYHHHHHFDNTDTHLPPGFRFHPTDEELITYYLVKKVLDNTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKTTTGGGGGSAVSTTAGGSKKAKMSTSTTTSAMSFCPEPSSPSSVYLPPLLDSSPYTTATTGSVTSAAAAYDGRQSSFENNNNNETTREHVSCFSTISNNFVNGFFDLAPMDSFARFQRNNNNNNNNNNGVSAFPSLRSLQDNLQLNPLFFSSAAAAPPFHGGEFHSGGTWPVPEDQRVSETAAAGMALGHSELDCMWGY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120836g00023 369 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 276 - -
Stsc120836g00023 369 FunFam NAC domain-containing protein 100-like 27 174 - -
Stsc120836g00023 369 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Stsc120836g00023 369 Gene3D NAC domain 27 174 IPR036093 GO:0003677|GO:0006355
Stsc120836g00023 369 MobiDBLite consensus disorder prediction 173 192 - -
Stsc120836g00023 369 SUPERFAMILY NAC domain 13 170 IPR036093 GO:0003677|GO:0006355
Stsc120836g00023 369 ProSiteProfiles NAC domain profile. 18 170 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120836g00023 Stsc-Chr120836 141117 143036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120836g00023 1 369 NAC Transcription Factor Family AT5G53950 53.518 6.85e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc120836g00023 NAM 9.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120836g00023 - - gmx:100788671 452.595