Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120836g00017 ATGGCTCCAAGGGACAGAGCAACCGCACTTAACGGACCCAACCTGACCGTACACAACGCCAAAGAGATCCGTTACAGAGGCGTTAGGAAACGGCCATGGGGCCGTTACGCCGCCGAGATCCGTGACCCTGGCAAGAAGACGCGCGTCTGGCTCGGAACTTTTGATACCGCGGAGGAGGCGGCGCGTGCGTACGACGCCGCCGCTAGGGAGTTCCGCGGCGCAAAGGCTAAGACCAATTTTCCGACTCCGGCGGAGCTTCTCAACAACAATAGCTTCGTTAACGTTAACATTAACAGCAACGGCAACGCGCGTAGCCCTAGCCAGAGTAGCACGCTTGATTCTTCTTCTCCTCCGCCGCCGCCGCCGCCGCTGGCACTGGCGGCGCAGACACAGCCGCAGCTGGAACTGACGCTGAAGCCGTTTTCGTCGGGCGGGGTGATGGCGTTCCCGGCGGCGCGTCCTGTTATGTTCTTTGACGCGTTCGCGCGTGCGGCGGAGAACGTGAGCCGGCGCGAGATGTGTTTCGTTAGCGGCGCGTGCAGCGACTCCGATTCTTCCTCGGTGGTGGACTACGAGGGCGTGCCACGTAAGGGACTTTTGAATCTGGACCTCAACATCGCTCCACCTCCCGAGGTCGCTTGA 642 0.6137 MAPRDRATALNGPNLTVHNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGAKAKTNFPTPAELLNNNSFVNVNINSNGNARSPSQSSTLDSSSPPPPPPPLALAAQTQPQLELTLKPFSSGGVMAFPAARPVMFFDAFARAAENVSRREMCFVSGACSDSDSSSVVDYEGVPRKGLLNLDLNIAPPPEVA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120836g00017 213 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Stsc120836g00017 213 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 190 - -
Stsc120836g00017 213 MobiDBLite consensus disorder prediction 97 112 - -
Stsc120836g00017 213 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Stsc120836g00017 213 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Stsc120836g00017 213 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Stsc120836g00017 213 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Stsc120836g00017 213 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Stsc120836g00017 213 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Stsc120836g00017 213 MobiDBLite consensus disorder prediction 97 126 - -
Stsc120836g00017 213 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Stsc120836g00017 213 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120836g00017 Stsc-Chr120836 117798 118439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120836g00017 14 159 AP2-EREBP Transcription Factor Family AT3G15210 66.438 3.29e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc120836g00017 AP2 2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120836g00017 K09286 - zju:107432572 191.045