Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120836g00011 ATGCGATTGTCTCCTAAAGCCGGTTCTTCATCTAAGCATAAGAATATTGGTAAATCGAGTCCCTGGCTTCGGAAGAAGCACAAGAGGTTGGACGCGATATGTGAGGAGGAGTACAATCGGAACCATGGGGATTCCAATGGGTGTGATGATGATTTGATCACTGATGCTGCGGATTCAGCGGTTCGCCGGAGCTCCAGGGTTCGGCGTGCCCCGGTTCTGCTGGATGCCTCTCCTGCTCCACCCAAGAAACGGCGGAAGTTAGGGAAGGTTGGAGTGTCTGCCAGGCGCATAGAGAGTGGCAAGAAGAGTTTAGAGCAGCAGAGTCCCGGCAGTGGCATTGAGGAGAGTCCTTCGGCTTGGAGATCGAGGTTGAGGTCTAGGGCTAGGGGTGCAGGTTTTGAGGTGAATGAGGAGAAGGGATCGCCCCGTGGGAAAAGGAAGCTTTTTGAGGATGTGGTTGGAAATAGGGGTGATGATGAGTTGAAGGTTGCAAAGGTTGATAAGAAGAAGGAACCAGAAGGTGGAGTGCCAAGGATTGTTAAGTCGAAGAGACCAGCGAGGATCAAAGCTACAAAGCATGAAGAAGAGCTTAAAGAGAATGAGTCTAATGATGTTGGGCCTAAGGAGAATGAATCTCATGAAGAGGGGCTTAGAGAGAATGAATCTCATGAGGAAGGGCTTCAAGACAATGAATCTCTTGAGGCAAAGTATGTCGAGAATGAGTCTTCTGAAGGGCATAGAGAGAATGAGTGTCATGGTAGTTTAGATGAGAGCAACAGTCAAGAAGTGGAGCTTATAGTGAACAAAGAGAAGGGTAATGATACGATTCCAGTAACAGATGTGTCTGGCGGGAATCTTGTAGTAATATTGGATGTGAGTGGCCCTCCTATTATAGGGAATGGGGAGAGAAACATGTCAAGCAATTTGCAAACGGAGGAATGTAGTGGCGATATTGAACGTGATGATCAGTCAGAACATGCAAACAAACAGGAACTTGCGGATAAACAGGCTGATCAGTCAGAACATGCAAATAAACAGGAAGATCAGTTAGCATGTGAGGAGGAAAGCAATAATGCAAGTGAAGGAGCTGAAATTGCAGGAACTTCAACAAAGCAAGTAGAAAATGAAGGACCAGCTGATAAGGAGGTTGAGATTGATGAAAACACTTTGAAAGATGCAAACAATGTGACGAAGGATGAGCTGAAACAAGCTTCAAATAGTTCCCAACGGATCAAAGAGGGCAGACGGTGTGGTTTGTGTGGGGGAGGCACTGACGGTAAGCCTCCAAAGAGGTTGCTTCAGGACAACGGTGAGAGTGAGAATGAAGCATATAGTGGTTCTTCAGCTTCAGAAGAGCCTAACTTTGATATCTGGGATGGTTTCAGTGATGAACCTGGCTGGCTTGGTCGTCTCTTGGGTCCTATTAATGATAACTTTGGCATTGCCCGAATATGGGTTCATCAGCAATGTGCTGTATGGAGTCCAGAGGTTTATTTTGCTGGGTTGGGGTGCTTGAAGAATACCAGGGCTGCACTTTACAGAGGAAGAGCATTGAAGTGCACACGGTGTGGAAGGCGAGGGGCAACCTCGGGTTGTCGTGTTGATCGTTGTCCAAAAACTTATCACTTGCCTTGTGCAAGAGCAAGTGGTTGTATCTTTGATCACCGTAAATTTCTTATTGCCTGCACAGATCATCGGCATCTTTTCCAACCTCATGGTAATAAATATTTATCCCGAATAAAGAAGTTGAAAGCTAGGAAAATGAAGTGGGATATGAGGAAGCATTCAAATGATGCTTGGAGAAAGGATATTGCTGCAGAAGAGAGATGGCTTGAAAATTGTGGAGAGGATGAGGAGTTTTTGAAACGTGAGAACAAGAGGCTTCATCGTGATTTATTGAGAATAGCACCAGTGTACATTGGTGGTTCAGATTCCGCATGTGAACCATCCTTTCAGGGATGGGAATCCGTAGCTGGACTTAAAGATGTCATCCGGTGTATGAAGGAAGTTGTTATTTTGCCTCTACTGTATCCTGAGCTCTTTGATAATTTAGGGCTTACACCTCCCAGAGGTGTTCTTTTGCATGGGTATCCTGGAACAGGGAAAACGTTAGTTGTCCGGGCATTGATAGGTGCATGTGCCCGTGGTGATAGACGAATTGCATATTTTGCCCGTAAAGGTGCAGATTGCTTGGGAAAATACGTGGGTGATGCTGAGCGCCAACTAAGACTATTATTTCAGGTTGCTGAGAGATGTCAACCTTCTATAATATTCTTCGATGAGATAGATGGACTAGCACCTACTCGTACTAGGCAGCAAGATCAGACACATAGTTCTGTTGTATCCACTTTGCTTGCCCTTATGGATGGTTTAAAATCCAGGGGTTCAGTTGTAGTTATAGGTGCGACGAACCGTCCTGATGCCGTTGACCCAGCACTTAGGCGGCCTGGAAGATTTGATCGGGAAATTTATTTCCCACTGCCATCAACTGAGGACAGAGCTTCCATTCTTTCACTTCACACTCAGAAGTGGCCTAAACCAATTACTGGGTCCTTGCTTGAGTGGATTGCCAAAAAAACTCCTGGCTATGCTGGTGCTGATCTTCAGGCTCTCTGTACTCAAGCAGCTATCAATGCCTTGAAGAGGAATTTCCCATTGCAAGAAGTGTTGTCCTTGGCAGAAGAAAAGCATTCTGGTTGGAAGAACCTCACCCTACCATCCTTTGCAGTGGAGGAGAGGGATTGGTTAGAGGCATTTTTGCATTCCCCACAGCCATGCTCCCGGAGAGAAGCAGGAAATGCCGCTAATGACGTTGTATGCTCCCCTCTTCCTGTCCACCTCATACCTTGTTTACTGGGGCCATTGTGCACACTTCTTGTATCTCTATATCTTGATGAACATCTATGGTTGCCACCTCCTTTATCTAAAGCTGTAACAGTGATTAAGAATGAAGTGGTTTCTGCTCTAGACAAAAAGAAAATGGCTGTTGATCACTGGTGGTTGCACATTGATGACTTACTACGAGAAAAAAATAGTGCTTCTGACGTGAAGAGCAAGCTCATGCATTTGGGCATTTTATCTGCAAATGATGGCTTTGGTGGTTCTCCTGATAATGCAGATGACACACATGATAACAATATGAATCCTGAGCCCTCCATAAAGAACCATTTGGGCATGCGGAGTGGTTTATTTCTAGACAAGTCATTTGCATTTACTAATAAGTCAGGATTTAGAATATTGATTTCTGGAAATCCCCGATCTGGCCAGAGACATCTTGCTTCCTGCTTTCTTTACTGCTTTGTGGGGAGTATTGAAATACAGAAAATTGATATGGCAACCGCTTCTCAAGAAGGGCATGGAGATGTAGTGCAAGGAATTGCACAAATATTATTGAAATGTGCTAGTCTTCAATCTTGCATACTGTTCTTGCCAAGAATTGATTTGTGGGCTGTAAACAAACATTTCCAAGCCTCGGAGATGGAAAGTGAGTTGAATACAGAACAAAACTCTGCAGAGATTACGGAAGGCCAGGCAAACAAGAAGGCTTCACATGCCTGGATGTCATTTATTGAGCAGGTGGAGTCCATTGGTGTATCCACGTCCTTGATGATTCTGGCTACATCAGAAGTTCCGTATTCAGAACTTCCAAGTAAGATAAGGGAATTCTTCAAGAGTTATCAATCTAAAGACATGCAATCAGCTCCTTTGCAGCAAACAGTCCCTCGATTCTCTCTGCATCTTGATTGTAATTTTGATCGTGACATGGTGATCAATCTATCTGTAGAAGAGCTACTGAGAAATTTAGTTGAGCAGCAGATTCAATTGATTCATCAGAGCTCTCACAGCTCTCATGTTCATATGGGTGTCCAAAAGGTTTCTGCTGATATTTGTGAAGACAAGGTATGCCAGAGTAAAAATAATGGATCCGTTGATGAAGAGAAGAATGAAACCCAAGTTCCTAAATCGACATCAGCACCTCCACCACCACCACCACATGATGGTAGGTCTCTTAAGGAAAAATCAACCTTGTCACTAGCAATATCCACATTTGGTTATCAAATTCTTCTTTTCCCACATTTTGCTGAACTTTGTTGGGTCACATCAAAACTCAAAGAAGGTCCCTGTGCTGATGTGAGTGGACCATGGAGGGGCTGGCCTTTTAATTCCTGTATAATTCGTCCCAATAATTCACTAGACAAGTCAGCAGTTTCTCGTAGCTCCGGTGGTGTTAAAAGCAAAGAAAGATCTGGTTTAGTTAGAGGCTTGATTGCCGTTGGTTTATCGGCTTACAGGGGTGTTTATAAATCAGCCAGAGAAGTTTCTCTTGATGTGAGAAAAGTTCTTGAGATCCTAATTGAGAATATCAATGCAAAAATTCAAGCTGGGAAAGACAGATATCGATATCTTCGAATTTTGTCACAAGTGGCTTATTTGGAAGATATAGTAAACAATTGGGCTTATGCATTGCTCAGTATGGATAAGGATTCTTCGGAGCCTATATCAAAAATCACGCCGGCAAGTGATGGGTTAAACAGTCATCTCTTGTGTGAAGATCACCAAGCTGGAAGTAAGGATGCTCATATGAACGGTGATGATTTGGAGACTCCAGGGAGAAGTTGTAAGGAAACTCATGCCGAAACATCTGGATCTCCTGCCTTGAATGAGCAAAATGATTATCCAGATAAACTTGATCATGATGGTAGAGATACAAATACAATCTCTAAAGAGTGTCTACTGGATGATTCTTTAAACAAGCATTCTAATGACTCTGCTGCTGCTAACCAACCCGTTGATCCATCCCCAAATCAAGAGAATGGAATGCTATCCCACGAGGTGGCCGGTGGAGATGTCAGCATGTCAGAAGAACTAGGCAAATCCACATTCACACACACTGCTGTCGTTTCTGAGAATGGACATCACACTGCCTTAGAGCAAGAGGGTCTTGAAGGAGGTACTGTAAGTACTGTCTCTAATCAGCCTCCGAGCATGTCCATTGAAGAGACTGGTGTAAGTGATGTTTACTCTTGCAAACATGAGAATGCTACAGGTATCAATGTCTCTTTAAGTAACGGCGGTGACCATGCCAAACCTGCAGCCATTTGTGTATATCAATGTTGCCCCAGATGTATTCAGAGCCTTTATCATGCGATACACAAGCTTCTTACACGTGGGTTGAGTGATAGCCATAGAACAGTAGAAGATGTCCATGATGCCGTTTCATCATTATCCGTGGATCTTATTTCAGCAACTAGAAAATGTCGCATTGAAGATCTCAGTGATTTATCTAACCAAACCTCTAAAAGGGAAAAGCATGGACTAACTTTGAACCTGAGAACATGTGACCCTGGAAACCAAGACAAGGATTTTGTTGCAGCTGAGTGTGTTACTCACTCGACAAGAGAGGATGCAACTGCCACCAAAGATGAGGTAATGAATGAACCATTGAAGCTTGATTTAAAATTTATATTCAAAGAAGGTGTTCTGGTTCCTATGAACACAGACAAAGATGTTTCTCTTCACTGTAAATTTAAAACCCTGTGCCTTTGTTCTGTTAGAGAGTTGATAGTAATGACCAAGAGCCCTTTTGATTGA 5592 0.4362 MRLSPKAGSSSKHKNIGKSSPWLRKKHKRLDAICEEEYNRNHGDSNGCDDDLITDAADSAVRRSSRVRRAPVLLDASPAPPKKRRKLGKVGVSARRIESGKKSLEQQSPGSGIEESPSAWRSRLRSRARGAGFEVNEEKGSPRGKRKLFEDVVGNRGDDELKVAKVDKKKEPEGGVPRIVKSKRPARIKATKHEEELKENESNDVGPKENESHEEGLRENESHEEGLQDNESLEAKYVENESSEGHRENECHGSLDESNSQEVELIVNKEKGNDTIPVTDVSGGNLVVILDVSGPPIIGNGERNMSSNLQTEECSGDIERDDQSEHANKQELADKQADQSEHANKQEDQLACEEESNNASEGAEIAGTSTKQVENEGPADKEVEIDENTLKDANNVTKDELKQASNSSQRIKEGRRCGLCGGGTDGKPPKRLLQDNGESENEAYSGSSASEEPNFDIWDGFSDEPGWLGRLLGPINDNFGIARIWVHQQCAVWSPEVYFAGLGCLKNTRAALYRGRALKCTRCGRRGATSGCRVDRCPKTYHLPCARASGCIFDHRKFLIACTDHRHLFQPHGNKYLSRIKKLKARKMKWDMRKHSNDAWRKDIAAEERWLENCGEDEEFLKRENKRLHRDLLRIAPVYIGGSDSACEPSFQGWESVAGLKDVIRCMKEVVILPLLYPELFDNLGLTPPRGVLLHGYPGTGKTLVVRALIGACARGDRRIAYFARKGADCLGKYVGDAERQLRLLFQVAERCQPSIIFFDEIDGLAPTRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPDAVDPALRRPGRFDREIYFPLPSTEDRASILSLHTQKWPKPITGSLLEWIAKKTPGYAGADLQALCTQAAINALKRNFPLQEVLSLAEEKHSGWKNLTLPSFAVEERDWLEAFLHSPQPCSRREAGNAANDVVCSPLPVHLIPCLLGPLCTLLVSLYLDEHLWLPPPLSKAVTVIKNEVVSALDKKKMAVDHWWLHIDDLLREKNSASDVKSKLMHLGILSANDGFGGSPDNADDTHDNNMNPEPSIKNHLGMRSGLFLDKSFAFTNKSGFRILISGNPRSGQRHLASCFLYCFVGSIEIQKIDMATASQEGHGDVVQGIAQILLKCASLQSCILFLPRIDLWAVNKHFQASEMESELNTEQNSAEITEGQANKKASHAWMSFIEQVESIGVSTSLMILATSEVPYSELPSKIREFFKSYQSKDMQSAPLQQTVPRFSLHLDCNFDRDMVINLSVEELLRNLVEQQIQLIHQSSHSSHVHMGVQKVSADICEDKVCQSKNNGSVDEEKNETQVPKSTSAPPPPPPHDGRSLKEKSTLSLAISTFGYQILLFPHFAELCWVTSKLKEGPCADVSGPWRGWPFNSCIIRPNNSLDKSAVSRSSGGVKSKERSGLVRGLIAVGLSAYRGVYKSAREVSLDVRKVLEILIENINAKIQAGKDRYRYLRILSQVAYLEDIVNNWAYALLSMDKDSSEPISKITPASDGLNSHLLCEDHQAGSKDAHMNGDDLETPGRSCKETHAETSGSPALNEQNDYPDKLDHDGRDTNTISKECLLDDSLNKHSNDSAAANQPVDPSPNQENGMLSHEVAGGDVSMSEELGKSTFTHTAVVSENGHHTALEQEGLEGGTVSTVSNQPPSMSIEETGVSDVYSCKHENATGINVSLSNGGDHAKPAAICVYQCCPRCIQSLYHAIHKLLTRGLSDSHRTVEDVHDAVSSLSVDLISATRKCRIEDLSDLSNQTSKREKHGLTLNLRTCDPGNQDKDFVAAECVTHSTREDATATKDEVMNEPLKLDLKFIFKEGVLVPMNTDKDVSLHCKFKTLCLCSVRELIVMTKSPFD 1863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120836g00011 1863 Gene3D - 828 889 - -
Stsc120836g00011 1863 SMART AAA_5 688 829 IPR003593 GO:0016887
Stsc120836g00011 1863 Pfam PHD-like zinc-binding domain 487 566 - -
Stsc120836g00011 1863 ProSitePatterns AAA-protein family signature. 797 815 IPR003960 GO:0005524|GO:0016887
Stsc120836g00011 1863 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 828 920 - -
Stsc120836g00011 1863 MobiDBLite consensus disorder prediction 188 269 - -
Stsc120836g00011 1863 MobiDBLite consensus disorder prediction 1583 1609 - -
Stsc120836g00011 1863 MobiDBLite consensus disorder prediction 296 451 - -
Stsc120836g00011 1863 MobiDBLite consensus disorder prediction 314 352 - -
Stsc120836g00011 1863 MobiDBLite consensus disorder prediction 1 17 - -
Stsc120836g00011 1863 PANTHER AAA DOMAIN-CONTAINING 20 1763 IPR045199 -
Stsc120836g00011 1863 MobiDBLite consensus disorder prediction 1521 1571 - -
Stsc120836g00011 1863 Pfam ATPase family associated with various cellular activities (AAA) 692 827 IPR003959 GO:0005524|GO:0016887
Stsc120836g00011 1863 MobiDBLite consensus disorder prediction 1584 1607 - -
Stsc120836g00011 1863 Gene3D - 653 827 IPR027417 -
Stsc120836g00011 1863 Pfam AAA+ lid domain 853 885 IPR041569 -
Stsc120836g00011 1863 MobiDBLite consensus disorder prediction 375 398 - -
Stsc120836g00011 1863 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 412 568 - -
Stsc120836g00011 1863 MobiDBLite consensus disorder prediction 1305 1338 - -
Stsc120836g00011 1863 MobiDBLite consensus disorder prediction 60 281 - -
Stsc120836g00011 1863 MobiDBLite consensus disorder prediction 353 374 - -
Stsc120836g00011 1863 MobiDBLite consensus disorder prediction 1521 1541 - -
Stsc120836g00011 1863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 885 IPR027417 -
Stsc120836g00011 1863 MobiDBLite consensus disorder prediction 1 25 - -
Stsc120836g00011 1863 ProSiteProfiles Extended PHD (ePHD) domain profile. 454 566 IPR034732 -
Stsc120836g00011 1863 MobiDBLite consensus disorder prediction 127 180 - -
Stsc120836g00011 1863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 462 568 IPR013083 -
Stsc120836g00011 1863 FunFam ATPase family, AAA domain-containing 2 651 834 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120836g00011 Stsc-Chr120836 82774 89815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120836g00011 654 889 Calmodulin-binding Proteins AT3G56690 41.597 5.18e-46 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120836g00011 - - ahf:112772466 3240.67