Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120836g00007 ATGGGTCGCCCACCAAGCAACGGAGGCCCTGCATTTCGCTTCACTCCATCTGAGGTAGCAGAAATGGAAGCTATTTTGCATGAACACAATAATGCAATGCCAGCACGCGATGTTCTTACAGCTATCGCTGAGAAGTTCAGTGAATCACCAGGTCGTAAAGACAAGATTACAGTGCAGATGAGACAAGTGTGGAATTGGTTTCAAAATAGGCGATATGCTATAAGGGCAAAATCAAACAAGTCTCTTCTAAAGTTAGATATCACACCAATGACCAAGGGCATTTCAGCCCCAGTAAGGAATATTCATCAATCGGCGGCTGCCCCGATCCCAACCGCTTCAGGAAAAGTTACGCAAGAAAGCTCACATACAGAATTCGAAGCTAAATCTGGAAGGGATAGAGCATGGTATGATGTTGCTAACTTTATAATGCACAGAAATTTGGAGAGTGGTGATCCGGAAGTGCTGGTAAGATTTTCTGGTTTTGGACCTGCGGAGGATGAGTGGGTAAATGTCCGAAAGAATGTTAGGCTGCGCTCTCTGCCATGTGAATCATCAGAATGTGTTGCAGTCCTCCCCGGGGATCTCATACTGTGTTTTCAGGAGGGTAAAGAACAGGCCCTTTATTTTGATGCCCATGTACTTGATGCTCAAAGGCGGAGGCATGATGTGAGAGGCTGTCGTTGTAGATTTTTGGTTCGTTATGATCACGATCAGTCCGAGGAAATTGTGCAAATTAGGAAGATCTGTCGCAGGCCCGAAACCGATTTCAGGTTACAACAACTTCACGGTGTGCCGGACCTTAAGAGTGGCATGGATCCAGCATCTGTTCATGCTGTCAGGGTTACTACTTCGGGGGAATCACAGAAACAACAGAATGCAAACATTCCGATGTCAACATTAGCACAAAGTAAAGCCGAAACATCTAGTGATGTTACAGCAGGAAATGTGTTCCCGGTAAGCGCTGCTACATTTGGAACCAACATTGCTTCAAGCAGTGTCCATGGTGCCTCTAGTCACAACATGCCTGAAGGGAATTAA 1038 0.4576 MGRPPSNGGPAFRFTPSEVAEMEAILHEHNNAMPARDVLTAIAEKFSESPGRKDKITVQMRQVWNWFQNRRYAIRAKSNKSLLKLDITPMTKGISAPVRNIHQSAAAPIPTASGKVTQESSHTEFEAKSGRDRAWYDVANFIMHRNLESGDPEVLVRFSGFGPAEDEWVNVRKNVRLRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVQIRKICRRPETDFRLQQLHGVPDLKSGMDPASVHAVRVTTSGESQKQQNANIPMSTLAQSKAETSSDVTAGNVFPVSAATFGTNIASSSVHGASSHNMPEGN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120836g00007 345 SMART HOX_1 7 81 IPR001356 GO:0003677
Stsc120836g00007 345 Gene3D - 10 83 - -
Stsc120836g00007 345 Gene3D - 182 254 - -
Stsc120836g00007 345 SUPERFAMILY Homeodomain-like 4 78 IPR009057 -
Stsc120836g00007 345 Pfam SAWADEE domain 122 249 IPR032001 GO:0003682
Stsc120836g00007 345 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 311 IPR039276 -
Stsc120836g00007 345 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Stsc120836g00007 345 CDD homeodomain 13 75 IPR001356 GO:0003677
Stsc120836g00007 345 Gene3D - 120 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120836g00007 Stsc-Chr120836 46469 50200 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc120836g00007 SAWADEE 8.3e-40 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120836g00007 - - qsa:O6P43_001009 447.588