Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120836g00006 ATGATGAAGGAGAAGGATGAAAGGATTCGTAGAACAGGAGAAATTTTGACCTATATTCGCACTTTGAAGATGTATGGATGGGAACTTATTTTTTCTAGTTGGTTGATGGAGACAAGATCTTTGGAAGTGAAACACCTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCAACCACACCAACGCTCTTTTCACTTTTCACATTTGGACTCTTCACACTGATGGGAAATCAACTTGATGCCGCAATGGTTTTCACTTGTCTTGCTTTATTTAACACATTGATATCGCCACTGAATTCATTTCCATGGGTGATTAATGGATTGATTGATGCCTTTATATCCTCTAGAAGGTTGAGTAGATTTCTTTCTTGTCCTGAGCATAGACTCAATGTGGGAGACACCAGTTCCTGTTCATCGTCTTTCTTCAGTAAACAACCTGATTCTGTACAAGGATTAGCTGTCGTTGTCCAAGATGTATCTTGTACTTGGTCAAGCAGTAATGAGCCACCATTAAATATGGTGTTGGATCATGTGACTCTAAACCTGTCCAAAGGTTCCGTTGTTGCTATTATTGGAGAGGTTGGTTCCGGTAAATCTTCCTTGTTATATTCAGTTCTTGGAGAAATGCGACTTACTCATGGATATATTTACTGTGATGGATCAGTGGCATATGTACCACAGGTCCCCTGGATTTTATCTGGTACTGTACGTGACAACATACTATTTGGGAAAAGCTATGATCCTGAAAGGTATACAGATACACTGAAGGCATGTGCGTTAGATGTTGATATTGCATTGATGGTTGGACATGACATGGCGTATATTGGAGAGAAAGGACTAAATTTATCTGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCAGTGTATCATGGCTCAGACGTAATTATGCTTGATGATGTTCTGAGTGCGGTTGATGTACAAGTTGCTCACTGGATTTTACACAATGCCATTCTAGGCCCTCTTATGCAAGGAAAAACTAGATTGTTCTGTACTCACAATGTGCAGGCAATATCATCAGCTGATGTGGTTGTTGTAATGGACAAGGGGCATGTAAAATGGTTGGGAAGTTCAGCTGCCTTCCCAATTTCTTCATACACAGGATCCTCCCCAGCGAATGAAATTGATTTAACTTTGACAAATGACAGAGAACCTTGCAGCTCAGATTCTTCATCCAAACCTAAGGAGAAATCTCTTCCTGAAAAGGAAATTGTGCATTCTCTGGAGATAGCAGAGGAGATAGTTGAAGTTGAGTTAAGGAAAGAGGGAAAAGTTGAGATTGGAGTGTATAGGAACTATGCTGTCTTCATTGGTCAGTTTGTTACAGTTGTTATATGCCTGTCAGCTATCCTCATGCAAGCATCTCGGAATGGAAATGATTTATGGCTATCATATTGGGTTGATACAACAACAGAAACTGGCCAAACAACATACTCTATGTCCTTTTATCTGGCTATACTATGTCTATTTTGTGCTGTGAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGATTACAAGCAGCAATTAAGGTTCACAATAGACTTCTTAGCAAGCTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCGGGTGGAAGAATACTGAACAGATTATCTTCAGATCTTTATACAATTGATGATTCCCTTCCGTTCATTATGAACATTCTCCTGGCTAATTTTGTAGGCCTGTTGGGTATTGCCATAATATTGTCATACGTACAGGTCTTCTTCTTACTACTCCTGTTGCCATTTTGGTATATCTACAGTAAACTCCAGTTCTTCTACAGGTCCACATCAAGAGAATTACGCCGATTGGACAGTGTTTCTCGTTCTCCAATATATACATCTTTTTCCGAAACACTTGACGGAACCTCAACTATAAGGGCTTTCAAATCCGAGGGCTTTTTCTTTGCCAAATTCATTGAACACATCACATTGTATCAAAAGACTTCATACACGGAGACTGTAGCAAGTTTATGGCTTTCCTTGCGTCTTCAGTTATTAGGTGCATTTATCGTCTCATTCATAGCTTTGATGGCTGTTGCTGGATCTCATAGAAGTCTGCCTATCAACTTTGGTACCCCTGGGCTGGTTGGATTGGCCCTCTCATATGCATCTCCTATCGTATCCTTGTTGGGGAGTTTTTTAACAAGTTTCACTGAAACAGAAAAGGAGATGGTTTCAGTTGAAAGAGCCCTTCAATACATGGACATTCCTCAAGAAGAACAAGGTGGATGCTTAAACTTGAACCCAGATTGGCCTAACCAAGGAGTTATTGACTTCCAGAATGTCACACTGAAATATATGCCATCTTTGCCACCTGCAATCTGCAATCTTAGTTTTACTATTTCTGGAGGGACACAGGTTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATGCCCTTTTCCGCCTGACCCCAATATCTTCGGGCTCCATTTTAGTTGATGGCACAGACATTAGAAATATTCCTGTCAGAGAACTGCGTACACATTTTGCTATTGTGCCTCAGAGTCCGTTCTTGTTTGATGGATCATTAAGGGATAACCTAGATCCATTAAAGATGAGTGATGACTTAAAAATTTGGGATGCTTTAGAGAAGTGCCATGTGAAAGAGGAAGTAGAAGTAGCTGGAGGGCTGGATATTCTCGTAAAGGAAGGAGGTATATTGTTTTCTGTTGGCCAGAGGCAACTTCTTTGCCTTGCACGTGCGCTTCTTAAGTCTTCAAAAGTTCTCTGTTTGGATGAATGCACTGCCAATGTGGACATTCAAACTGCTTCCCTTCTCCACACCACCATATCCAGTGAGTGCAAAGGCATGACAGTGATCACAATTGCTCACAGGATTTCAACCGTCTTAAATATGGATAACATTCTGATTCTAGACCATGGCAGCCTGGCTGAACAAGGAAATCCACAGGTTCTTCTAAAAGATGACTCCTCATTATTTTCTAGTTTTGTTAAAGCTTCATCAATGTAA 3039 0.4074 MMKEKDERIRRTGEILTYIRTLKMYGWELIFSSWLMETRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLFTLMGNQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAFISSRRLSRFLSCPEHRLNVGDTSSCSSSFFSKQPDSVQGLAVVVQDVSCTWSSSNEPPLNMVLDHVTLNLSKGSVVAIIGEVGSGKSSLLYSVLGEMRLTHGYIYCDGSVAYVPQVPWILSGTVRDNILFGKSYDPERYTDTLKACALDVDIALMVGHDMAYIGEKGLNLSGGQRARLALARAVYHGSDVIMLDDVLSAVDVQVAHWILHNAILGPLMQGKTRLFCTHNVQAISSADVVVVMDKGHVKWLGSSAAFPISSYTGSSPANEIDLTLTNDREPCSSDSSSKPKEKSLPEKEIVHSLEIAEEIVEVELRKEGKVEIGVYRNYAVFIGQFVTVVICLSAILMQASRNGNDLWLSYWVDTTTETGQTTYSMSFYLAILCLFCAVNSFFTLVRAFSFAFGGLQAAIKVHNRLLSKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIILSYVQVFFLLLLLPFWYIYSKLQFFYRSTSRELRRLDSVSRSPIYTSFSETLDGTSTIRAFKSEGFFFAKFIEHITLYQKTSYTETVASLWLSLRLQLLGAFIVSFIALMAVAGSHRSLPINFGTPGLVGLALSYASPIVSLLGSFLTSFTETEKEMVSVERALQYMDIPQEEQGGCLNLNPDWPNQGVIDFQNVTLKYMPSLPPAICNLSFTISGGTQVGIIGRTGAGKSSVLNALFRLTPISSGSILVDGTDIRNIPVRELRTHFAIVPQSPFLFDGSLRDNLDPLKMSDDLKIWDALEKCHVKEEVEVAGGLDILVKEGGILFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLHTTISSECKGMTVITIAHRISTVLNMDNILILDHGSLAEQGNPQVLLKDDSSLFSSFVKASSM 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120836g00006 1012 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 775 1008 IPR003439 GO:0005524
Stsc120836g00006 1012 SUPERFAMILY ABC transporter transmembrane region 453 757 IPR036640 GO:0005524|GO:0016020
Stsc120836g00006 1012 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 157 384 IPR003439 GO:0005524
Stsc120836g00006 1012 Gene3D ABC transporter type 1, transmembrane domain 1 131 IPR036640 GO:0005524|GO:0016020
Stsc120836g00006 1012 Gene3D ABC transporter type 1, transmembrane domain 428 759 IPR036640 GO:0005524|GO:0016020
Stsc120836g00006 1012 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 113 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120836g00006 1012 ProSitePatterns ABC transporters family signature. 911 925 IPR017871 GO:0005524|GO:0016887
Stsc120836g00006 1012 ProSitePatterns ABC transporters family signature. 285 299 IPR017871 GO:0005524|GO:0016887
Stsc120836g00006 1012 Pfam ABC transporter 178 310 IPR003439 GO:0005524
Stsc120836g00006 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 369 IPR027417 -
Stsc120836g00006 1012 Pfam ABC transporter 794 939 IPR003439 GO:0005524
Stsc120836g00006 1012 Gene3D - 761 1010 IPR027417 -
Stsc120836g00006 1012 Gene3D - 138 376 IPR027417 -
Stsc120836g00006 1012 CDD ABC_6TM_MRP7_D2_like 452 752 - -
Stsc120836g00006 1012 FunFam ABC transporter C family member 5 418 758 - -
Stsc120836g00006 1012 CDD ABCC_MRP_domain1 157 360 - -
Stsc120836g00006 1012 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 453 740 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120836g00006 1012 MobiDBLite consensus disorder prediction 390 410 - -
Stsc120836g00006 1012 Pfam ABC transporter transmembrane region 454 705 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120836g00006 1012 SMART AAA_5 187 361 IPR003593 GO:0016887
Stsc120836g00006 1012 SMART AAA_5 801 985 IPR003593 GO:0016887
Stsc120836g00006 1012 FunFam ATP-binding cassette (ABC) transporter, putative 762 1009 - -
Stsc120836g00006 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 768 1000 IPR027417 -
Stsc120836g00006 1012 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1010 - -
Stsc120836g00006 1012 FunFam ABC transporter C family member 13 139 393 - -
Stsc120836g00006 1012 CDD ABCC_MRP_domain2 773 992 - -
Stsc120836g00006 1012 SUPERFAMILY ABC transporter transmembrane region 2 129 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120836g00006 Stsc-Chr120836 34073 43073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120836g00006 764 998 Calmodulin-binding Proteins AT2G36910 32.258 8.57e-33 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120836g00006 K05674 - gmx:100814181 1640.17