Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120836g00005 ATGATGAAGGAGAAGGATGAAAGGATTCGTAGAACAGGAGAAATTTTGACCTATATTCGCACTTTGAAGATGTATGGATGGGAACTTATTTTTTCTAGTTGGTTGATGGAGACAAGATCTTTGGAAGTGAAACACCTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCAACCACACCAACGCTCTTTTCACTTTTCACATTTGGACTCTTCACACTGATGGGAAATCAACTTGATGCCGCAATGGTTTTCACTTGTCTTGCTTTATTTAACACATTGATATCGCCACTGAATTCATTTCCATGGGTGATTAATGGATTGATTGATGCCTTTATATCCTCTAGAAGGTTGAGTAGATTTCTTTCTTGTCCTGAGCATAGACTCAATGTGGGAGACACCAGTTCCTGTTCATCGTCTTTCTTCAGTAAACAACCTGATTCTGTACAAGGATTAGCTGTCGTTGTCCAAGATGTATCTTGTACTTGGTCAAGCAGTAATGAGCCACCATTAAATATGGTGTTGGATCATGTGACTCTAAACCTGTCCAAAGGTTCCGTTGTTGCTATTATTGGAGAGGTTGGTTCCGGTAAATCTTCCTTGTTATATTCAGTTCTTGGAGAAATGCGACTTACTCATGGATATATTTACTGTGATGGATCAGTGGCATATGTACCACAGGTCCCCTGGATTTTATCTGGTACTGTACGTGACAACATACTATTTGGGAAAAGCTATGATCCTGAAAGGTATACAGATACACTGAAGGCATGTGCGTTAGATGTTGATATTGCATTGATGGTTGGACATGACATGGCGTATATTGGAGAGAAAGGACTAAATTTATCTGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCAGTGTATCATGGCTCAGACGTAATTATGCTTGATGATGTTCTGAGTGCGGTTGATGTACAAGTTGCTCACTGGATTTTACACAATGCCATTCTAGGCCCTCTTATGCAAGGAAAAACTAGATTGTTCTGTACTCACAATGTGCAGGCAATATCATCAGCTGATGTGGTTGTTGTAATGGACAAGGGGCATGTAAAATGGTTGGGAAGTTCAGCTGCCTTCCCAATTTCTTCATACACAGGATCCTCCCCAGCGAATGAAATTGATTTAACTTTGACAAATGACAGAGAACCTTGCAGCTCAGATTCTTCATCCAAACCTAAGGAGAAATCTCTTCCTGAAAAGGAAATTGTGCATTCTCTGGAGATAGCAGAGGAGATAGTTGAAGTTGAGTTAAGGAAAGAGGGAAAAGTTGAGATTGGAGTGTATAGGAACTATGCTGTCTTCATTGGTCAGTTTGTTACAGTTGTTATATGCCTGTCAGCTATCCTCATGCAAGCATCTCGGAATGGAAATGATTTATGGCTATCATATTGGGTTGATACAACAACAGAAACTGGCCAAACAACATACTCTATGTCCTTTTATCTGGCTATACTATGTCTATTTTGTGCTGTGAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGATTACAAGCAGCAATTAAGGTTCACAATAGACTTCTTAGCAAGCTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCGGGTGGAAGAATACTGAACAGATTATCTTCAGATCTTTATACAATTGATGATTCCCTTCCGTTCATTATGAACATTCTCCTGGCTAATTTTGTAGGCCTGTTGGGTATTGCCATAATATTGTCATACGTACAGGTCTTCTTCTTACTACTCCTGTTGCCATTTTGGTATATCTACAGTAAACTCCAGTTCTTCTACAGGTCCACATCAAGAGAATTACGCCGATTGGACAGTGTTTCTCGTTCTCCAATATATACATCTTTTTCCGAAACACTTGACGGAACCTCAACTATAAGGGCTTTCAAATCCGAGGGCTTTTTCTTTGCCAAATTCATTGAACACATCACATTGTATCAAAAGACTTCATACACGGAGACTGTAGCAAGTTTATGGCTTTCCTTGCGTCTTCAGTTATTAGGTGCATTTATCGTCTCATTCATAGCTTTGATGGCTGTTGCTGGATCTCATAGAAGTCTGCCTATCAACTTTGGTACCCCTGGGCTGGTTGGATTGGCCCTCTCATATGCATCTCCTATCGTATCCTTGTTGGGGAGTTTTTTAACAAGTTTCACTGAAACAGAAAAGGAGATGGTTTCAGTTGAAAGAGCCCTTCAATACATGGACATTCCTCAAGAAGAACAAGGTGGATGCTTAAACTTGAACCCAGATTGGCCTAACCAAGGAGTTATTGACTTCCAGAATGTCACACTGAAATATATGCCATCTTTGCCACCTGCAATCTGCAATCTTAGTTTTACTATTTCTGGAGGGACACAGGTTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATGCCCTTTTCCGCCTGACCCCAATATCTTCGGGCTCCATTTTAGTTGATGGCACAGACATTAGAAATATTCCTGTCAGAGAACTGCGTACACATTTTGCTATTGTGCCTCAGAGTCCGTTCTTGTTTGATGGATCATTAAGGGATAACCTAGATCCATTAAAGATGAGTGATGACTTAAAAATTTGGGATGCTTTAGAGAAGTGCCATGTGAAAGAGGAAGTAGAAGTAGCTGGAGGGCTGGATATTCTCGTAAAGGAAGGAGGTATATTGTTTTCTGTTGGCCAGAGGCAACTTCTTTGCCTTGCACGTGCGCTTCTTAAGTCTTCAAAAGTACGGGTGATGATTCAAGAGAAGTGGTTATGTTTACATTTCCATCATGACATATTAATTTTGCTGTTACTGAAGGATGGTAGTGTCCTCCTTGAGCAAAAAACTATATATCATAGAAAGGCATAA 2916 0.4047 MMKEKDERIRRTGEILTYIRTLKMYGWELIFSSWLMETRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLFTLMGNQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAFISSRRLSRFLSCPEHRLNVGDTSSCSSSFFSKQPDSVQGLAVVVQDVSCTWSSSNEPPLNMVLDHVTLNLSKGSVVAIIGEVGSGKSSLLYSVLGEMRLTHGYIYCDGSVAYVPQVPWILSGTVRDNILFGKSYDPERYTDTLKACALDVDIALMVGHDMAYIGEKGLNLSGGQRARLALARAVYHGSDVIMLDDVLSAVDVQVAHWILHNAILGPLMQGKTRLFCTHNVQAISSADVVVVMDKGHVKWLGSSAAFPISSYTGSSPANEIDLTLTNDREPCSSDSSSKPKEKSLPEKEIVHSLEIAEEIVEVELRKEGKVEIGVYRNYAVFIGQFVTVVICLSAILMQASRNGNDLWLSYWVDTTTETGQTTYSMSFYLAILCLFCAVNSFFTLVRAFSFAFGGLQAAIKVHNRLLSKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIILSYVQVFFLLLLLPFWYIYSKLQFFYRSTSRELRRLDSVSRSPIYTSFSETLDGTSTIRAFKSEGFFFAKFIEHITLYQKTSYTETVASLWLSLRLQLLGAFIVSFIALMAVAGSHRSLPINFGTPGLVGLALSYASPIVSLLGSFLTSFTETEKEMVSVERALQYMDIPQEEQGGCLNLNPDWPNQGVIDFQNVTLKYMPSLPPAICNLSFTISGGTQVGIIGRTGAGKSSVLNALFRLTPISSGSILVDGTDIRNIPVRELRTHFAIVPQSPFLFDGSLRDNLDPLKMSDDLKIWDALEKCHVKEEVEVAGGLDILVKEGGILFSVGQRQLLCLARALLKSSKVRVMIQEKWLCLHFHHDILILLLLKDGSVLLEQKTIYHRKA 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120836g00005 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 369 IPR027417 -
Stsc120836g00005 971 CDD ABC_6TM_MRP7_D2_like 452 752 - -
Stsc120836g00005 971 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 157 384 IPR003439 GO:0005524
Stsc120836g00005 971 Gene3D ABC transporter type 1, transmembrane domain 428 759 IPR036640 GO:0005524|GO:0016020
Stsc120836g00005 971 Gene3D - 138 376 IPR027417 -
Stsc120836g00005 971 Pfam ABC transporter transmembrane region 454 705 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120836g00005 971 CDD ABCC_MRP_domain1 157 360 - -
Stsc120836g00005 971 Pfam ABC transporter 794 932 IPR003439 GO:0005524
Stsc120836g00005 971 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 453 740 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120836g00005 971 FunFam ABC transporter C family member 13 139 393 - -
Stsc120836g00005 971 SUPERFAMILY ABC transporter transmembrane region 2 129 IPR036640 GO:0005524|GO:0016020
Stsc120836g00005 971 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 934 - -
Stsc120836g00005 971 Gene3D ABC transporter type 1, transmembrane domain 1 131 IPR036640 GO:0005524|GO:0016020
Stsc120836g00005 971 FunFam ABC transporter C family member 5 418 758 - -
Stsc120836g00005 971 MobiDBLite consensus disorder prediction 390 410 - -
Stsc120836g00005 971 FunFam Multidrug resistance-associated protein member 4 761 950 - -
Stsc120836g00005 971 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 113 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120836g00005 971 ProSitePatterns ABC transporters family signature. 911 925 IPR017871 GO:0005524|GO:0016887
Stsc120836g00005 971 Gene3D - 761 954 IPR027417 -
Stsc120836g00005 971 Pfam ABC transporter 178 310 IPR003439 GO:0005524
Stsc120836g00005 971 ProSitePatterns ABC transporters family signature. 285 299 IPR017871 GO:0005524|GO:0016887
Stsc120836g00005 971 SUPERFAMILY ABC transporter transmembrane region 453 757 IPR036640 GO:0005524|GO:0016020
Stsc120836g00005 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 768 934 IPR027417 -
Stsc120836g00005 971 SMART AAA_5 187 361 IPR003593 GO:0016887
Stsc120836g00005 971 SMART AAA_5 801 971 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120836g00005 Stsc-Chr120836 34073 43073 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120836g00005 764 934 Calmodulin-binding Proteins AT2G36910 29.891 6.93e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120836g00005 K05674 - gmx:100814181 1522.68