Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120836g00002 ATGGTGGCCGCCGGCGAACCCATGAAGAACAAACCCAACCATAACCAACTCAACCCCAATTGGGTTCAACTCCAACAAAAGCTAAAGCTCAATAGCTCTAAGTCTTCAAGGACTTCCAAAGAAGAAGACACCCCAAAATTAATACTGGGGAAACGTAAAGAGAGGCCGGACGATGAATCCAATGATCCTCAGGTTGATCCTCTTGTTCCTGTAAATGATGATTCAAGTCTGACAGATGCAGTGGCCATAGATTGTGAAATGGTTGGCGTTGGTCAAGGAAACAAAAGTGCGCTGGGAAGAGTAACAATGGTTAATAAGTGGGGAAATGTTCTTTATGATGAGTTTGTTCGGCCAGTAGAACGAGTTGTTGACTTCCGTACTAAAATTAGTGGCATAAGATCTCGAGATTTAAAAAAAGCGGTTGACTTTTGGACGGCTCAGAAGAAAGTGGCAGAGTTGATGAAAGGAAGGCTCCTTGTCGGTCATGCCTTGCAGAATGATCTCAAGGCGTTGTTATTAAGTCATCCAAAAAAGGACATTCGAGATACCTCCGAGTACCAGCCATTTCTAAAGTCAGGTTGTAGAAGAGCACTGCGGCATCTTGCTGCAGAAATTCTTGGTGCCAAGATCCAATCAGGAGAGCACTGCCCTATACAAGATGCTCGTGCTGCTATGCTGCTTTACCAAAGAAATAGAAAAGAGTGGGAAAGGAGCTTAAAAGATCAGTTTAGGCTAAAAAAGAAGCAAAATAAAGGGAAGAAGAAAAAGAAGCTGAGGAATGAAGATACTTCAAATGCCAACCATGCTATAACTGAATCATAG 822 0.4282 MVAAGEPMKNKPNHNQLNPNWVQLQQKLKLNSSKSSRTSKEEDTPKLILGKRKERPDDESNDPQVDPLVPVNDDSSLTDAVAIDCEMVGVGQGNKSALGRVTMVNKWGNVLYDEFVRPVERVVDFRTKISGIRSRDLKKAVDFWTAQKKVAELMKGRLLVGHALQNDLKALLLSHPKKDIRDTSEYQPFLKSGCRRALRHLAAEILGAKIQSGEHCPIQDARAAMLLYQRNRKEWERSLKDQFRLKKKQNKGKKKKKLRNEDTSNANHAITES 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120836g00002 273 MobiDBLite consensus disorder prediction 239 273 - -
Stsc120836g00002 273 Pfam Exonuclease 81 228 IPR013520 -
Stsc120836g00002 273 Gene3D - 76 256 IPR036397 GO:0003676
Stsc120836g00002 273 Coils Coil 218 238 - -
Stsc120836g00002 273 CDD REX4_like 81 229 IPR037431 GO:0006364|GO:0008408
Stsc120836g00002 273 MobiDBLite consensus disorder prediction 34 62 - -
Stsc120836g00002 273 SMART exoiiiendus 79 237 IPR013520 -
Stsc120836g00002 273 SUPERFAMILY Ribonuclease H-like 80 235 IPR012337 -
Stsc120836g00002 273 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 32 247 IPR047021 GO:0004527
Stsc120836g00002 273 MobiDBLite consensus disorder prediction 11 33 - -
Stsc120836g00002 273 FunFam Interferon-stimulated exonuclease gene 20 76 247 - -
Stsc120836g00002 273 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120836g00002 Stsc-Chr120836 6903 10703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120836g00002 80 238 C2H2 Transcription Factor Family AT5G40310 34.857 4.58e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120836g00002 K18327 - gmx:100819122 408.683