Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00082 ATGGCGGAAGCGAAGGAGGAGAGCAAATCTAGCGAGGAGAGTGTGAAGCTGTTCGTAGGTCAAGTTCCGAAGCACATGACGGAATCGGAACTGCTCGCAATGTTCAAGGAGTTCGCCTTGGTCGACGAGGTCAACATCATCAAGGACAAAGCCACGCGCTCCTCTCGAGGTTGTTGCTTCGTGATTTGTCCGTCGAGAGAAGAGGCTGATAAGGCCGTCAATGCGTGTCACAATAAGAAAACGCTTCCAGGGGCTTCGAGTCCCTTGCAAGTAAAGTATGCTGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATCGGAATGCTTCCAAAGAATGTTTCTGAAGTAGAAGTCTCTGCACTTTTCTCCAAGTTTGGAACTATAAAAGATTTACAAATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAAGCCCTTGCTGCTTTAGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCTTTGGTAGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCCCGACGAGCTCAGAGAGCACAGTCCCAATCTTCCAATGCGCCACATGCTGATTCCCAGCACCCATCATTGTTTGGAGCCTTGCCAATGGGTTATGTTCCTCCTTATAATGGGTATAGTTATCAGGCTCCTGGAGGTTATGGGATCATGCCATACCGGATGCCACCGATGCAGAATCAACCCGGTTACCATAACATGATGCCGCACATGAATCAAGCAAATGCACTACGGCCTGAACTTGGCCCCAATATGAACCCAAGAAATTATCATGTGCCTCCTGCAAGTTACGTTGGCTCTTACCCCGCCGTGCCAGGCCTACAACATCCAATGGCATATGCTGGAGGCATGATTAGTCCAAGGCCTATGAGTAGTTCTCCTGGTTCTATTTCACCTGCAGGTGGCAATAGCAACTCTGGTACATCATCTTCAAGCGCAGGCAAGAGTTCTGGGGGTCAGGTTGAAGGACCACCTGGTGCCAACCTGTTTATTTATCACATTCCTCAAGAATTCGGAGATCAAGAGCTTGCCACTGCCTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGCAAATGTTTTGGATTTGTTAGTTATGATTCCCCAGAAGCTGCTCAATCTGCCATTAGTATGATGAATGGGTGCCAATTAGGAGGTAAGAAATTAAAGGTCCAGCTTAAGAGGGACAACAAGCAGAGTAAGCCTTACTGA 1299 0.4604 MAEAKEESKSSEESVKLFVGQVPKHMTESELLAMFKEFALVDEVNIIKDKATRSSRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSKFGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQRAQSQSSNAPHADSQHPSLFGALPMGYVPPYNGYSYQAPGGYGIMPYRMPPMQNQPGYHNMMPHMNQANALRPELGPNMNPRNYHVPPASYVGSYPAVPGLQHPMAYAGGMISPRPMSSSPGSISPAGGNSNSGTSSSSAGKSSGGQVEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00082 432 CDD RRM1_2_CELF1-6_like 104 179 - -
Stsc120835g00082 432 SUPERFAMILY RNA-binding domain, RBD 103 427 IPR035979 GO:0003676
Stsc120835g00082 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Stsc120835g00082 432 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Stsc120835g00082 432 MobiDBLite consensus disorder prediction 310 338 - -
Stsc120835g00082 432 MobiDBLite consensus disorder prediction 193 207 - -
Stsc120835g00082 432 SMART rrm1_1 104 179 IPR000504 GO:0003723
Stsc120835g00082 432 SMART rrm1_1 16 92 IPR000504 GO:0003723
Stsc120835g00082 432 SMART rrm1_1 348 421 IPR000504 GO:0003723
Stsc120835g00082 432 PANTHER RNA BINDING PROTEIN 14 426 - -
Stsc120835g00082 432 Gene3D - 318 424 IPR012677 -
Stsc120835g00082 432 CDD RRM1_2_CELF1-6_like 16 92 - -
Stsc120835g00082 432 MobiDBLite consensus disorder prediction 310 342 - -
Stsc120835g00082 432 Gene3D - 2 98 IPR012677 -
Stsc120835g00082 432 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Stsc120835g00082 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 349 419 IPR000504 GO:0003723
Stsc120835g00082 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Stsc120835g00082 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Stsc120835g00082 432 CDD RRM3_CELF1-6 349 421 - -
Stsc120835g00082 432 MobiDBLite consensus disorder prediction 185 209 - -
Stsc120835g00082 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 425 IPR000504 GO:0003723
Stsc120835g00082 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Stsc120835g00082 432 FunFam RNA-binding protein BRN1 313 424 - -
Stsc120835g00082 432 Gene3D - 99 192 IPR012677 -
Stsc120835g00082 432 FunFam RNA-binding protein BRN1 2 99 - -
Stsc120835g00082 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Stsc120835g00082 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Stsc120835g00082 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Stsc120835g00082 432 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00082 Stsc-Chr120835 338293 343415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00082 346 429 Eukaryotic Initiation Factors Gene Family AT1G71770 36.047 9.75e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00082 K13207 - gmx:100813239 737.643