Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00078 ATGTCTCACTCAAGTATTCATGCAACAATCCAGGCAGAGGCAGCAAAAGCCTACGGAAATATTCAAGGTGTTAACTCAGAGAAAAGATGCAAGAAATGTCGCTCTAATAAAAGTAGAAGTTGCACAAAGGTTCTTAAGCAAGGAACTGCTCTTGGCAGAGCAATTGATCTCACTCGTTTTGCTGGATATGACGAACTCGTTTCTGAACTTGACTGGATGTTTGATTTTGGTGGAGGCTTAATTAATGGAAGCAGTGGATGGCATGTGACCTGCATAGATGAAGATGGAGATATTATGTTCCTGGGTGATTTCCCATGGCAGGACTTCCAATCCATGGTGCAAAAGATGATAATATGTCCAAAGGATGGAATTGACAATTCTAGTCCAAGTTCCTCTGCATACCCTGCAAGCATTTAA 417 0.4149 MSHSSIHATIQAEAAKAYGNIQGVNSEKRCKKCRSNKSRSCTKVLKQGTALGRAIDLTRFAGYDELVSELDWMFDFGGGLINGSSGWHVTCIDEDGDIMFLGDFPWQDFQSMVQKMIICPKDGIDNSSPSSSAYPASI 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00078 138 Gene3D - 34 127 - -
Stsc120835g00078 138 ProSiteProfiles PB1 domain profile. 39 122 IPR000270 GO:0005515
Stsc120835g00078 138 SUPERFAMILY CAD & PB1 domains 42 115 - -
Stsc120835g00078 138 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 123 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc120835g00078 138 Pfam AUX/IAA family 80 118 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00078 Stsc-Chr120835 322831 324057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00078 22 131 B3 DNA Binding Superfamily AT5G62000 43.636 1.21e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc120835g00078 AUX_IAA 1.1e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00078 - - lja:Lj1g3v4764520.2 172.555