Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00071 ATGGCAGAGCTGAATGCCGCTGCAAGCTTCAAACCTAGCGATGAACAACTCATCCACTTCCTTTCCGACAAGCTCAAAGCTCAAACAATGGACGACGACGCCGCCATCAACATCCACGAATGTGACTGCTTGTACGGCCGCACCAAGAATCCTTGGGACATTTGGCGTGACTTCGCCGGCGACGTTGATGCCGGCAGGACCCTTCTTTTCTTCTTCTCTCCCAACAAGAAGCACCCTTCACCGGCTTCCCGCCCCATCGGAGCCGGTGTGTGGGAAGCTCAAGGCGAAAACATCGACGGCGAAGCCATCATTGGGAACAAGGGGAAGAACCGCCGTATTGGGACGAAGAAATGTTTCTCCTTTGAGAGGAGTGGCACCTCCTACGACGGTGCATGGAGCTTGCATGAATACACTCTTCATGGATCTTTGCACCACACTAATAATACTTCAGGAGAGAATAGCTATGTTATATGCAAATTGATAAAGAATAGAGAAGGAGAGGTTGAGGCACAACTTGGTGATAAAAGAAAAAGGCACAGTAATGCCCAATCTGCCACCACCGGTGTTCATATTGAACTTAATGCTCCTCATGCACATAGGAACACTAAAGACCAAGAGGTCCAATTCACACCCAATGAACTTGGCAGGCAAATGTTGTTGGACAGATTTGATGGATTAACAGTAACAAACGAGAACGTTATCAGGAACCTCATGCAGCAAGGTGGAACAAGAAGAGGTGGAAAGTCCCTTTAA 753 0.4834 MAELNAAASFKPSDEQLIHFLSDKLKAQTMDDDAAINIHECDCLYGRTKNPWDIWRDFAGDVDAGRTLLFFFSPNKKHPSPASRPIGAGVWEAQGENIDGEAIIGNKGKNRRIGTKKCFSFERSGTSYDGAWSLHEYTLHGSLHHTNNTSGENSYVICKLIKNREGEVEAQLGDKRKRHSNAQSATTGVHIELNAPHAHRNTKDQEVQFTPNELGRQMLLDRFDGLTVTNENVIRNLMQQGGTRRGGKSL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00071 250 ProSiteProfiles NAC domain profile. 4 163 IPR003441 GO:0003677|GO:0006355
Stsc120835g00071 250 SUPERFAMILY NAC domain 4 162 IPR036093 GO:0003677|GO:0006355
Stsc120835g00071 250 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 183 - -
Stsc120835g00071 250 Pfam No apical meristem (NAM) protein 8 139 IPR003441 GO:0003677|GO:0006355
Stsc120835g00071 250 Gene3D NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00071 Stsc-Chr120835 289338 290653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00071 1 194 NAC Transcription Factor Family AT5G24590 28.571 3.10e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc120835g00071 NAM 1.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00071 - - ahf:112756623 371.318