Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00070 ATGACTGCTCCTCATCCAAATTCAGCAAACTCTGCATCACACAGACAGCAAGATAAACCCTCACCATCACCATGCGACTACTGCAACAGCTCCAGATCAGTCCTCTACTGCAGAGCAGATTCAGCGAAGCTTTGTTTCGCATGCGACCGCGAGGTTCATTCAACGAACCAGCTCTTCTCAAAGCACACACGCACTCTTCTCTGCGATTCTTGCTACGACTCCCCTGCTTCCATACTCTGTTCCACGGAGTCCTCTGTTCTCTGCCATAACTGTGACTGGGAAAGTCACAACCTTTCTCTCCCAACCCTACATGAGAGGGGTCCCCTTGAAGGATTCACTGCTTGCCCTTCTGTTTCCGAGCTTTTAACCATTCTGGGGTTTGAAGATATTGGGAAAAAGGCTCTGCTTTATGGTGGTGATGGTGGCGGTGGTGGTGGTGGAGGGGAAAAGGATTCTGCTGCTGCTGTTGACTTTATGGGCTCTGAGATTGAAGGGTTTTCAGATTTCTTCGTTTGGGATGCTCCTTCTGTTGTTAGCCTTGATGATTTGATTTCTTCTTCTGCTGCTCCTTCTCATAACTTTCAGGCTATGGAGGTTCCTCCACTCCCCAAGAATCGCAAAGCTGCTTGTGGGAGACATAGAGAAGAGATTCTTAGTCAGCTTCGTGAACTCGCAAAGTCTGAGCCCTTAGACTTAGACAATGAACAACAACAGTACCTGCAATCAGGGAACATGTCCACGGATCCTGAACATGATTTCAAGACTGATATATTCCCTCCTTATGAGTGGCAGAGAGGAAGCAATGAACCTATGAATCAAGTTGTTCCACTGAATACATTGTTGGGTGAAGAAGCTGCGGTTGAACATCCAACTTCTGAGGGGAAACCATCAGTATCTCTCAAATCTGAGACGGTATCAGTTGTTCCAAAAGCTGCTCCATGTGAGTTAACGAGTCAGGAAAGAGATTCTGCATTGTTACGGTACAAGCAAAAGAAGAAAACCAGAAGATATGAGAAGCACATAAGATATGAATCACGAAAAGTTCGGGCACAAAGCAGGATAAGAGTGAAGGGCCGATTTGCTAAGATTGAACACTGA 1098 0.4627 MTAPHPNSANSASHRQQDKPSPSPCDYCNSSRSVLYCRADSAKLCFACDREVHSTNQLFSKHTRTLLCDSCYDSPASILCSTESSVLCHNCDWESHNLSLPTLHERGPLEGFTACPSVSELLTILGFEDIGKKALLYGGDGGGGGGGGEKDSAAAVDFMGSEIEGFSDFFVWDAPSVVSLDDLISSSAAPSHNFQAMEVPPLPKNRKAACGRHREEILSQLRELAKSEPLDLDNEQQQYLQSGNMSTDPEHDFKTDIFPPYEWQRGSNEPMNQVVPLNTLLGEEAAVEHPTSEGKPSVSLKSETVSVVPKAAPCELTSQERDSALLRYKQKKKTRRYEKHIRYESRKVRAQSRIRVKGRFAKIEH 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00070 365 ProSiteProfiles Zinc finger B-box type profile. 20 67 IPR000315 GO:0008270
Stsc120835g00070 365 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 24 362 - -
Stsc120835g00070 365 Pfam CCT motif 321 362 IPR010402 GO:0005515
Stsc120835g00070 365 ProSiteProfiles Zinc finger B-box type profile. 63 109 IPR000315 GO:0008270
Stsc120835g00070 365 SMART bboxneu5 20 67 IPR000315 GO:0008270
Stsc120835g00070 365 SMART bboxneu5 68 109 IPR000315 GO:0008270
Stsc120835g00070 365 ProSiteProfiles CCT domain profile. 321 363 IPR010402 GO:0005515
Stsc120835g00070 365 Pfam B-box zinc finger 67 108 IPR000315 GO:0008270
Stsc120835g00070 365 CDD Bbox1_BBX-like 24 67 - -
Stsc120835g00070 365 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00070 Stsc-Chr120835 286828 289121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00070 25 336 C2C2-CO-like Transcription Factor Family AT2G47890 39.879 2.39e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc120835g00070 CCT 1.4e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00070 - - gmx:100777428 468.774