Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00069 ATGACTGCTCCTCATCCAAATTCAGCAAACTCTGCATCACACAGACAGCAAGATAAACCCTCACCATCACCATGCGACTACTGCAACAGCTCCAGATCAGTCCTCTACTGCAGAGCAGATTCAGCGAAGCTTTGTTTCGCATGCGACCGCGAGGTTCATTCAACGAACCAGCTCTTCTCAAAGCACACACGCACTCTTCTCTGCGATTCTTGCTACGACTCCCCTGCTTCCATACTCTGTTCCACGGAGTCCTCTGTTCTCTGCCATAACTGTGACTGGGAAAGTCACAACCTTTCTCTCCCAACCCTACATGAGAGGGGTCCCCTTGAAGGATTCACTGCTTGCCCTTCTGTTTCCGAGCTTTTAACCATTCTGGGGTTTGAAGATATTGGGAAAAAGGCTCTGCTTTATGGTGGTGATGGTGGCGGTGGTGGTGGTGGAGGGGAAAAGGATTCTGCTGCTGCTGTTGACTTTATGGGCTCTGAGATTGAAGGGTTTTCAGATTTCTTCGTTTGGGATGCTCCTTCTGTTGTTAGCCTTGATGATTTGATTTCTTCTTCTGCTGCTCCTTCTCATAACTTTCAGGCTATGGAGGTTCCTCCACTCCCCAAGAATCGCAAAGCTGCTTGTGGGAGACATAGAGAAGAGATTCTTAGTCAGCTTCGTGAACTCGCAAAGTCTGAGCCCTTAGACTTAGACAATGAACAACAACAGTACCTGCAATCAGGGAACATGTCCACGGATCCTGAACATGATTTCAAGACTGATATATTCCCTCCTTATGAGTGGCAGAGAGGAAGCAATGAACCTATGAATCAAGTTGTTCCACTGAATACATTGTTGGGTGAAGAAGCTGCGGTTGAACATCCAACTTCTGAGGGGAAACCATCAGTATCTCTCAAATCTGAGACGGTATCAGTTGTTCCAAAAGCTGCTCCATGTGAGTTAACGAGTCAGGAAAGAGATTCTGCATTGTTACGGTACAAGCAAAAGAAGAAAACCAGAAGGAGCTTCCTTTGA 1020 0.4676 MTAPHPNSANSASHRQQDKPSPSPCDYCNSSRSVLYCRADSAKLCFACDREVHSTNQLFSKHTRTLLCDSCYDSPASILCSTESSVLCHNCDWESHNLSLPTLHERGPLEGFTACPSVSELLTILGFEDIGKKALLYGGDGGGGGGGGEKDSAAAVDFMGSEIEGFSDFFVWDAPSVVSLDDLISSSAAPSHNFQAMEVPPLPKNRKAACGRHREEILSQLRELAKSEPLDLDNEQQQYLQSGNMSTDPEHDFKTDIFPPYEWQRGSNEPMNQVVPLNTLLGEEAAVEHPTSEGKPSVSLKSETVSVVPKAAPCELTSQERDSALLRYKQKKKTRRSFL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00069 339 ProSiteProfiles Zinc finger B-box type profile. 20 67 IPR000315 GO:0008270
Stsc120835g00069 339 Pfam B-box zinc finger 67 108 IPR000315 GO:0008270
Stsc120835g00069 339 MobiDBLite consensus disorder prediction 286 339 - -
Stsc120835g00069 339 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 24 336 - -
Stsc120835g00069 339 ProSiteProfiles Zinc finger B-box type profile. 63 109 IPR000315 GO:0008270
Stsc120835g00069 339 SMART bboxneu5 20 67 IPR000315 GO:0008270
Stsc120835g00069 339 SMART bboxneu5 68 109 IPR000315 GO:0008270
Stsc120835g00069 339 CDD Bbox1_BBX-like 24 67 - -
Stsc120835g00069 339 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00069 Stsc-Chr120835 286828 289121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00069 25 336 C2C2-CO-like Transcription Factor Family AT2G47890 39.879 1.66e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc120835g00069 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00069 - - gmx:100777428 419.853