Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00068 ATGGATCCGGTTACGCATAGAAGTAGAACAGAAGAGGGTCCAATTTTCACGCTGTCTGGTATTCGGTGGCGCCCATCGTTTTCCAATTTCCACGCAGGCCGCAGCTGTGCCACTCCGTTCAGTTCACTAATGGCAGACTTGTCTTCCGCATCAACTCCTCCCACTCCACCTGAATCTCAAACTAGACTACACTTTGGGAAATTGCAGCACGGATGCGAACACTACAAGAGACGTTGCAAAATTCGAGCTCCATGCTGCAACCAGATCTTCTCTTGCCGTCACTGCCACAACGACGCCATGGGTTCACTAAGCGATCCCAAGGATCGTCATGAACTTATCAGGAGCGATGTCAAGCAAGTTATATGTTCTATCTGTGGTACTGAGCAAGAGGCTGCCAAGGTCTGTGCAAACTGCGGCGTCAACATGGGAGAATATTATTGTGAAATTTGCAAATTCTATGATGATGATACAGAGAAAGGACAGTTCCATTGTGACGAATGCGGGATTTGCAGGGTTGGTGGCCGTGAGAATTTCTTCCACTGTCCGAAATGTGGCTCTTGCTATTCGGTGAGCTTGCAAGGAAACCACTCATGTGTGGAGAACTCGATGAAGAGTTTCTGTCCTGTCTGTTATGAGTATCTGTTTGATTCAATAAAAGGCACCACAATTATGGATTGTGGACACACAATGCATATGGATTGCTTTCGTGAAATGGCAGAGCAAAATCAGTATCGCTGTCCTATCTGCTCAAAGACAATTTTTGATATGTCTCGGAGCTGGGAACATTTAGATCTGGAGATTGAAGCTATTCCCATGCCCGAGGAATATAATTTTGAGGTTTCTATTCTGTGCAATGATTGTAACAAAAGAAGCAGGGTTTCCTTTCACATATTTGGTCACAAGTGCAGAGAGTGTGGTTCGTATAACACCCGCCAAATTTCAGCACCTGAAAGCCAGCAATGA 963 0.4548 MDPVTHRSRTEEGPIFTLSGIRWRPSFSNFHAGRSCATPFSSLMADLSSASTPPTPPESQTRLHFGKLQHGCEHYKRRCKIRAPCCNQIFSCRHCHNDAMGSLSDPKDRHELIRSDVKQVICSICGTEQEAAKVCANCGVNMGEYYCEICKFYDDDTEKGQFHCDECGICRVGGRENFFHCPKCGSCYSVSLQGNHSCVENSMKSFCPVCYEYLFDSIKGTTIMDCGHTMHMDCFREMAEQNQYRCPICSKTIFDMSRSWEHLDLEIEAIPMPEEYNFEVSILCNDCNKRSRVSFHIFGHKCRECGSYNTRQISAPESQQ 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00068 320 Gene3D - 277 319 - -
Stsc120835g00068 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 272 IPR013083 -
Stsc120835g00068 320 ProSiteProfiles Zinc finger CHY-type profile. 65 140 IPR008913 GO:0008270
Stsc120835g00068 320 SUPERFAMILY RING/U-box 206 256 - -
Stsc120835g00068 320 ProSiteProfiles Zinc finger CTCHY-type profile. 142 206 IPR017921 -
Stsc120835g00068 320 ProSiteProfiles Zinc finger RING-type profile. 207 250 IPR001841 -
Stsc120835g00068 320 SUPERFAMILY CHY zinc finger-like 69 141 IPR037274 GO:0008270
Stsc120835g00068 320 CDD RING-H2_Pirh2-like 207 250 - -
Stsc120835g00068 320 Pfam Ring finger domain 207 249 IPR001841 -
Stsc120835g00068 320 SMART ring_2 207 249 IPR001841 -
Stsc120835g00068 320 Pfam Zinc-ribbon 254 311 IPR039512 -
Stsc120835g00068 320 Pfam CHY zinc finger 72 152 IPR008913 GO:0008270
Stsc120835g00068 320 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 59 318 - -
Stsc120835g00068 320 SUPERFAMILY Zinc hairpin stack 143 200 IPR037275 -
Stsc120835g00068 320 FunFam RING finger and CHY zinc finger domain-containing protein 1 277 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00068 Stsc-Chr120835 280722 285229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00068 70 315 C2H2 Transcription Factor Family AT3G18290 41.667 1.05e-54 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00068 K10144 - qsa:O6P43_007118 477.248