Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00059 ATGGAGCTTTACGGTCGCAACCCGGGGAGGAACGGGTCGAACCCGGGGAATCAGCCCGAATGGCACTCGCCGGGCCCCGATACTGGTCTCGAAGAATCGATGTGGCAGTTGACGCTGGCTAGCAGCGAATCGTACCCGGAGCGACCCAGTGCTCCGAATTGCGTGTATTACATGCGAACCGGTTACTGTGGATATGGTGCAAGGTGCCGTTACAATCATCCTCGTGATCGTGCTGCGGTTGCTGCGGCTGTAAGAGCTACAGGGGAGTACCCGGAAAGAGCAGGTGAACCTCCATGTCAGTATTATCTAAAAACTGGAACATGTAAATTTGGTGCATCCTGTAAATTTCACCATCCAAAACATGGAGGTGGATCTTTGAGCCAAGCACCGCTAAATATTTATGGATACCCATTACGGCCGGGTGAGAAAGAATGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGTGTAACTTGTAAATTCCATCATCCTGCTGCTGGCACGTCAATGCCGGCTTCTGCACCTCAATTTTATCAACAGGTGCAATCTCCTACGGTTCCTCTGCCTGACCAATACGGGGGAGCATCCACAAGCTTGAGAGTAGCTAGGCCTCCAATGTTGGCTGGTTCGTACGTTCAAGGGGCTTATGGTCCTGTACTTCTCTCCCCAGGAGTTGTTCCTTTTCCTGGATGGAGTCCTTATTCGGCACCTGTTAGTCCTGTGTTATCTCCTGGTGCTCAACCTGCTGTTGGGGCAACTTCTCTATATGGAGTGACCCAATTGTCTTCATCAACATCAGCTTTTGCTAGGCCATATACTCCGCTGCCCTCTTCTATTGGCCCCTCAGGCAGTAGTCAGAAGGAGGAAGCTTTTCCTGAACGACCTGGACAACCTGAATGCCAATACTATCTTAAAACAGGGGACTGTAAATTTGGATCAGCTTGTCGATTTGATCATCCACGGGATAGAGTTGTGACACGACCACTTCTCAGCCCCATTGGTCTTCCTCTTCGTCCGTTGTAG 1026 0.5039 MELYGRNPGRNGSNPGNQPEWHSPGPDTGLEESMWQLTLASSESYPERPSAPNCVYYMRTGYCGYGARCRYNHPRDRAAVAAAVRATGEYPERAGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGVTCKFHHPAAGTSMPASAPQFYQQVQSPTVPLPDQYGGASTSLRVARPPMLAGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSIGPSGSSQKEEAFPERPGQPECQYYLKTGDCKFGSACRFDHPRDRVVTRPLLSPIGLPLRPL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00059 341 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Stsc120835g00059 341 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Stsc120835g00059 341 SUPERFAMILY CCCH zinc finger 299 324 IPR036855 GO:0046872
Stsc120835g00059 341 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Stsc120835g00059 341 Gene3D - 43 124 - -
Stsc120835g00059 341 Gene3D - 283 330 - -
Stsc120835g00059 341 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Stsc120835g00059 341 SMART c3hfinal6 295 322 IPR000571 GO:0046872
Stsc120835g00059 341 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Stsc120835g00059 341 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Stsc120835g00059 341 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
Stsc120835g00059 341 MobiDBLite consensus disorder prediction 277 296 - -
Stsc120835g00059 341 SUPERFAMILY CCCH zinc finger 141 166 IPR036855 GO:0046872
Stsc120835g00059 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 75 IPR000571 GO:0046872
Stsc120835g00059 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Stsc120835g00059 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Stsc120835g00059 341 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 297 322 IPR000571 GO:0046872
Stsc120835g00059 341 PANTHER PROTEIN PHOSPHATASE RELATED 40 340 - -
Stsc120835g00059 341 MobiDBLite consensus disorder prediction 1 33 - -
Stsc120835g00059 341 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Stsc120835g00059 341 Gene3D - 125 174 - -
Stsc120835g00059 341 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00059 Stsc-Chr120835 245271 248169 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00059 1 340 C2H2 Transcription Factor Family AT5G18550 51.811 1.45e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc120835g00059 zf-CCCH 1.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00059 - - lang:109331475 612.453