Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00058 ATGGAGCTTTACGGTCGCAACCCGGGGAGGAACGGGTCGAACCCGGGGAATCAGCCCGAATGGCACTCGCCGGGCCCCGATACTGGTCTCGAAGAATCGATGTGGCAGTTGACGCTGGCTAGCAGCGAATCGTACCCGGAGCGACCCAGTGCTCCGAATTGCGTGTATTACATGCGAACCGGTTACTGTGGATATGGTGCAAGGTGCCGTTACAATCATCCTCGTGATCGTGCTGCGGTTGCTGCGGCTGTAAGAGCTACAGGGGAGTACCCGGAAAGAGCAGGTGAACCTCCATGTCAGTATTATCTAAAAACTGGAACATGTAAATTTGGTGCATCCTGTAAATTTCACCATCCAAAACATGGAGGTGGATCTTTGAGCCAAGCACCGCTAAATATTTATGGATACCCATTACGGCCGGGTGAGAAAGAATGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGTGTAACTTGTAAATTCCATCATCCTGCTGCTGGCACGTCAATGCCGGCTTCTGCACCTCAATTTTATCAACAGGTGCAATCTCCTACGGTTCCTCTGCCTGACCAATACGGGGGAGCATCCACAAGCTTGAGAGTAGCTAGGCCTCCAATGTTGGCTGGTTCGTACGTTCAAGGGGCTTATGGTCCTGTACTTCTCTCCCCAGGAGTTGTTCCTTTTCCTGGATGGAGTCCTTATTCGGCACCTGTTAGTCCTGTGTTATCTCCTGGTGCTCAACCTGCTGTTGGGGCAACTTCTCTATATGGAGTGACCCAATTGTCTTCATCAACATCAGCTTTTGCTAGGCCATATACTCCGCTGCCCTCTTCTATTGGCCCCTCAGGCAGTAGTCAGAAGGAGGAAGCTTTTCCTGAACGACCTGGACAACCTGAATGCCAATACTATCTTAAAACAGGGGACTGTAAATTTGGATCAGCTTGTCGATTTGATCATCCACGGGATAGAGTTGTGACACGACCACTTCTCAGCCCCATTGGTCTTCCTCTTCGTCCGGGGGTTCAACCTTGTGCATTTTATTTGCAAAATGGACATTGCAAGTTTGGCTCCACATGCAAATTTGACCATCCTTTCGGGCCTGTGAGATATAGTCCATCGACGTCTTCCCTGACCGATGCACCAGTTACTCCATACCCAGTTGGGTCTTTGCTGTCTACCCTGGCTCCTTCCTTAACATCCTCAGAGCTTCGGCCTGAATTGATGTCGGGATCCAAAATGGAATCCTCCTTTTCAACCAGAATGCCTTCTTCTGGAAATAGCCCCACTAGCTCTGTCAGTTTAATCTTTTCACAAGGTGGATCTGTCTCGCTATCTGATGTGCAACTCTCAACTCAGAGTTCTGCCCCTCTAAGCACTAGCCGAAGCACCAGATAG 1398 0.4971 MELYGRNPGRNGSNPGNQPEWHSPGPDTGLEESMWQLTLASSESYPERPSAPNCVYYMRTGYCGYGARCRYNHPRDRAAVAAAVRATGEYPERAGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGVTCKFHHPAAGTSMPASAPQFYQQVQSPTVPLPDQYGGASTSLRVARPPMLAGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSIGPSGSSQKEEAFPERPGQPECQYYLKTGDCKFGSACRFDHPRDRVVTRPLLSPIGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPFGPVRYSPSTSSLTDAPVTPYPVGSLLSTLAPSLTSSELRPELMSGSKMESSFSTRMPSSGNSPTSSVSLIFSQGGSVSLSDVQLSTQSSAPLSTSRSTR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00058 465 SUPERFAMILY CCCH zinc finger 341 370 IPR036855 GO:0046872
Stsc120835g00058 465 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Stsc120835g00058 465 SMART c3hfinal6 339 366 IPR000571 GO:0046872
Stsc120835g00058 465 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Stsc120835g00058 465 SMART c3hfinal6 295 322 IPR000571 GO:0046872
Stsc120835g00058 465 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Stsc120835g00058 465 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Stsc120835g00058 465 Gene3D - 46 123 - -
Stsc120835g00058 465 Gene3D - 293 375 - -
Stsc120835g00058 465 SUPERFAMILY CCCH zinc finger 141 166 IPR036855 GO:0046872
Stsc120835g00058 465 Gene3D - 124 175 - -
Stsc120835g00058 465 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Stsc120835g00058 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Stsc120835g00058 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 75 IPR000571 GO:0046872
Stsc120835g00058 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 341 366 IPR000571 GO:0046872
Stsc120835g00058 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Stsc120835g00058 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 297 322 IPR000571 GO:0046872
Stsc120835g00058 465 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
Stsc120835g00058 465 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Stsc120835g00058 465 SUPERFAMILY CCCH zinc finger 299 324 IPR036855 GO:0046872
Stsc120835g00058 465 MobiDBLite consensus disorder prediction 1 33 - -
Stsc120835g00058 465 ProSiteProfiles Zinc finger C3H1-type profile. 339 367 IPR000571 GO:0046872
Stsc120835g00058 465 MobiDBLite consensus disorder prediction 402 433 - -
Stsc120835g00058 465 PANTHER PROTEIN PHOSPHATASE RELATED 40 373 - -
Stsc120835g00058 465 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Stsc120835g00058 465 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00058 Stsc-Chr120835 245271 250500 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00058 1 415 C2H2 Transcription Factor Family AT5G18550 52.294 1.26e-133 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc120835g00058 zf-CCCH 2.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00058 - - lja:Lj5g3v1665190.1 790.03