Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00057 ATGGAGCTTTACGGTCGCAACCCGGGGAGGAACGGGTCGAACCCGGGGAATCAGCCCGAATGGCACTCGCCGGGCCCCGATACTGGTCTCGAAGAATCGATGTGGCAGTTGACGCTGGCTAGCAGCGAATCGTACCCGGAGCGACCCAGTGCTCCGAATTGCGTGTATTACATGCGAACCGGTTACTGTGGATATGGTGCAAGGTGCCGTTACAATCATCCTCGTGATCGTGCTGCGGTTGCTGCGGCTGTAAGAGCTACAGGGGAGTACCCGGAAAGAGCAGGTGAACCTCCATGTCAGTATTATCTAAAAACTGGAACATGTAAATTTGGTGCATCCTGTAAATTTCACCATCCAAAACATGGAGGTGGATCTTTGAGCCAAGCACCGCTAAATATTTATGGATACCCATTACGGCCGGGTGAGAAAGAATGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGTGTAACTTGTAAATTCCATCATCCTGCTGCTGGCACGTCAATGCCGGCTTCTGCACCTCAATTTTATCAACAGGTGCAATCTCCTACGGTTCCTCTGCCTGACCAATACGGGGGAGCATCCACAAGCTTGAGAGTAGCTAGGCCTCCAATGTTGGCTGGTTCGTACGTTCAAGGGGCTTATGGTCCTGTACTTCTCTCCCCAGGAGTTGTTCCTTTTCCTGGATGGAGTCCTTATTCGGCACCTGTTAGTCCTGTGTTATCTCCTGGTGCTCAACCTGCTGTTGGGGCAACTTCTCTATATGGAGTGACCCAATTGTCTTCATCAACATCAGCTTTTGCTAGGCCATATACTCCGCTGCCCTCTTCTATTGGCCCCTCAGGCAGTAGTCAGAAGGAGGAAGCTTTTCCTGAACGACCTGGACAACCTGAATGCCAATACTATCTTAAAACAGGGGACTGTAAATTTGGATCAGCTTGTCGATTTGATCATCCACGGGATAGAGTTGTGACACGACCACTTCTCAGCCCCATTGGTCTTCCTCTTCGTCCGAAAACAGGGGGTTCAACCTTGTGCATTTTATTTGCAAAATGGACATTGCAAGTTTGGCTCCACATGCAAATTTGA 1095 0.4968 MELYGRNPGRNGSNPGNQPEWHSPGPDTGLEESMWQLTLASSESYPERPSAPNCVYYMRTGYCGYGARCRYNHPRDRAAVAAAVRATGEYPERAGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGVTCKFHHPAAGTSMPASAPQFYQQVQSPTVPLPDQYGGASTSLRVARPPMLAGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSIGPSGSSQKEEAFPERPGQPECQYYLKTGDCKFGSACRFDHPRDRVVTRPLLSPIGLPLRPKTGGSTLCILFAKWTLQVWLHMQI 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00057 364 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Stsc120835g00057 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 297 322 IPR000571 GO:0046872
Stsc120835g00057 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Stsc120835g00057 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 75 IPR000571 GO:0046872
Stsc120835g00057 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Stsc120835g00057 364 Gene3D - 124 174 - -
Stsc120835g00057 364 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Stsc120835g00057 364 MobiDBLite consensus disorder prediction 1 34 - -
Stsc120835g00057 364 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Stsc120835g00057 364 SMART c3hfinal6 295 322 IPR000571 GO:0046872
Stsc120835g00057 364 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Stsc120835g00057 364 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Stsc120835g00057 364 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
Stsc120835g00057 364 SUPERFAMILY CCCH zinc finger 141 166 IPR036855 GO:0046872
Stsc120835g00057 364 Gene3D - 284 353 - -
Stsc120835g00057 364 Gene3D - 47 123 - -
Stsc120835g00057 364 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Stsc120835g00057 364 PANTHER PROTEIN PHOSPHATASE RELATED 40 341 - -
Stsc120835g00057 364 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Stsc120835g00057 364 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Stsc120835g00057 364 SUPERFAMILY CCCH zinc finger 299 324 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00057 Stsc-Chr120835 245271 250500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00057 1 353 C2H2 Transcription Factor Family AT5G18550 51.075 3.21e-116 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc120835g00057 zf-CCCH 1.5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00057 - - lang:109331475 612.453