Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00054 ATGGTGGAAAGGAGGAAGCCTCTCGTTCTCTCTTCCACCAAACACCTCATCAATTCCTTCTTGAACTCTTCCCCAGGCCACGACCCTACAACCGCCACCGCCACCGCCACCGCAACTACCACTCCCCTCTTCAACTTACCTGCAGGGATTCTCCGATTCTCCGACCACCCTAATCACCACCCCCAATTGCCTTCTCTTGACGATTCTGCCCTTGTTGGTCTCTCCACTTTACTTCTTAAGAGACTCTCTATCACTTCTGGTTCACTGGTTCTGGTGAAGAATGCTGAGATGGGTGTGCAGAGGATTGCTGTGGCCATTGCTCTTGATCCTCCAGGAACTACTTCTATTCTTGAGCCTGATTCTGATTCGAATTTATCATTATCATCATCATCTTCTTCTCATCCTTCTAGAATAATGCTTGTGTTTCCTTCTTGTGATTTCCCTGCTAGTGGTGCCTTGTTGTTTGATCATGAAGTTGCTTATTTGTCTCCTCTTTTAGCATTTAATCTTAACTTGCACATGTCATGCTTAAAATCCATTCTACAACATGGGGATGACACTTTAGCTTCTTATTTCAAGCCCCAATTTTGTAACGAGGATGTTGCAAAAAGCATTGAGGATTCTGTTATCAATATTGAGTTGGCACCTTTTGCTCAAGCTCCTAGGTTTGCATCACATTTGAGAGTTTCTTTTGTGAAGATGCCAGAATGTGGCATCCTTGAATCTATCAGAGAAAGTTCACCTATTGAATCAAAAGAACGGCAGGACATGATCGACTTGGCATTACAAAAGTACTTCGAAGTTGATAGATATTTGTCAAGAGGAGATGTTTTTGGGATTAACATAAACTGGAAATGCAATTCAACTATTTGCATTCCATGCAACCAAAAATCACACAAGAAAAATGACAGTGACCTTGTTTACTTCAAGGTCATTGCTATGGAACCATCAGATGAACTGTACCTTCGAGTCAATAAAACCTCAACCGCTCTGGTCCTAGGAGGGAGTTCACCATCCGCCCTTCCTCCAGATTTGTTAATTGCTGGACCAGAAGGGCCTGTGCCCTTGCAAGGAGACACTGTAAAGATATTGGCTTCAATACTTACACCAACTTTCTGTCCGTCGGCCCTCTCTTCGAAGTTTAGAATTTCAGTTCTATTGTATGGCTTGGCAGGTTGTGGGAAGAGAACTGTAGTTAGATATGTTGCTCGTCGACTGGGCTTGCATGTGGTGGAATATAACTGTAATGATCTAATTGTGTCTGAAAGAAAATCTATTGCTTTGGCTCAAGCTTTCAAGACAGCGCAAAGATACTCACCAGCAATACTTCTTCTACAACATTTTGATGTTTTTCGAGATTCACCTTCTCCTGATGGTTCCCTAAATGATCAAAGAGGCAATACATCTGAAGTTGCATCTGTTATCAGGAAATTCACTGAACCAATTAGTGAACATGATAGCAACTCAAGGGGAAAATCAAATGGTGAATTTGTTGAGAAGACTGTTGAGAAAACGAGCATGCATCAGGTCCTCTTGATTGCTGCTGCCGACAGCTCAGAAGGTCTACCTCCAACTATCAGACGCTGCTTTAGCCATGAAATAAGCATGGGACCTTTGACTGAAGAGCAAAGGGCTGAAATGTTATCCCATTCCCTTCAAAGTGTTTCTGGACTCCTCTCTGATACTGATTTGGAGGGTTTTGTAAAAGAAATAGTTGGTCAAACATCTGGTTTTATGCCCAGGGATATGTGTGCTCTAATTGCTGATGCTGGTGCCAACTTATTTCCCAGGAACAATGCTGAAGTGGACAAACATAGGTTTGAGGATATAGAGGCTTCTTCGAGTTCCAAAGTGACAGAGGAGAAGCAGAAAGTTTCACCTCAAATTCCTAGGAAGGAAGATTTGATGAATGCTTTAGAACGATCGAAGAAAAGAAATGCATCAGCATTGGGCACTCCAAAAGTTCCCAATGTGAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAATCGATCCTGGATACTGTTCAGTTGCCCCTCCTGCATAAAGATCTTTTTGCATCTGGATTACGCAAGAGATCTGGTGTTCTTCTGTACGGTCCTCCTGGAACTGGCAAAACATTATTAGCAAAAGCTGTTGCTACTGAATGTTCCTTAAATTTTCTTAGTGTAAAAGGTCCTGAACTGATAAACATGTACATCGGAGAGTCCGAGAAGAATGTTCGAGACATTTTCCAGAAGGCTAGATCAGCACGTCCATGTGTTATCTTCTTCGATGAGCTTGATTCTCTAGCCCCAGCTCGGGGTGCTTCTGGAGATTCTGGGGGTGTTATGGACAGGGTGGTTTCTCAGATGCTTGCAGAGATCGATGGCTTAAGTGATTCAACACAGGATCTGTTTATCATCGGTGCAAGTAATAGACCGGATTTGATCGATCCAGCACTTCTACGGCCAGGTAGATTCGATAAGCTTCTATATGTTGGAGTTAACTCCGATGCATCTTATAGGGAGCGGGTCTTGAAAGCACTTACTCGAAAGTTCAAGTTGCATGAAGATGTTTCACTCTACTCTATAGCAAAGAAATGTCCACCGAACTTCACCGGAGCAGACATGTATGCACTGTGTGCAGACGCCTGGTTCCATGCAGCAAAGCGCAAGGTTTCGAGCGCTGATTCAGAGTCTTCCAGCCAAGATAGCGAAGCAGATTCTGTCGTCGTTGAATACAATGATTTTGTCCAGGTCTTAGTAGAGCTTTCTCCTTCCCTGTCCATGGCTGAGCTTCAGAAGTATGAGAAACTTAGAGATCAGTTTGAGGGCACCTCTAAATAG 2832 0.4326 MVERRKPLVLSSTKHLINSFLNSSPGHDPTTATATATATTTPLFNLPAGILRFSDHPNHHPQLPSLDDSALVGLSTLLLKRLSITSGSLVLVKNAEMGVQRIAVAIALDPPGTTSILEPDSDSNLSLSSSSSSHPSRIMLVFPSCDFPASGALLFDHEVAYLSPLLAFNLNLHMSCLKSILQHGDDTLASYFKPQFCNEDVAKSIEDSVINIELAPFAQAPRFASHLRVSFVKMPECGILESIRESSPIESKERQDMIDLALQKYFEVDRYLSRGDVFGININWKCNSTICIPCNQKSHKKNDSDLVYFKVIAMEPSDELYLRVNKTSTALVLGGSSPSALPPDLLIAGPEGPVPLQGDTVKILASILTPTFCPSALSSKFRISVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCNDLIVSERKSIALAQAFKTAQRYSPAILLLQHFDVFRDSPSPDGSLNDQRGNTSEVASVIRKFTEPISEHDSNSRGKSNGEFVEKTVEKTSMHQVLLIAAADSSEGLPPTIRRCFSHEISMGPLTEEQRAEMLSHSLQSVSGLLSDTDLEGFVKEIVGQTSGFMPRDMCALIADAGANLFPRNNAEVDKHRFEDIEASSSSKVTEEKQKVSPQIPRKEDLMNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVSSADSESSSQDSEADSVVVEYNDFVQVLVELSPSLSMAELQKYEKLRDQFEGTSK 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00054 943 FunFam Peroxisome biogenesis protein 6 831 917 - -
Stsc120835g00054 943 SMART AAA_5 381 540 IPR003593 GO:0016887
Stsc120835g00054 943 SMART AAA_5 693 833 IPR003593 GO:0016887
Stsc120835g00054 943 CDD RecA-like_PEX6_r2 669 828 IPR047533 -
Stsc120835g00054 943 FunFam Peroxisome biogenesis protein 6 354 537 - -
Stsc120835g00054 943 PANTHER AAA-FAMILY ATPASE 70 940 - -
Stsc120835g00054 943 ProSitePatterns AAA-protein family signature. 800 818 IPR003960 GO:0005524|GO:0016887
Stsc120835g00054 943 Gene3D - 356 558 IPR027417 -
Stsc120835g00054 943 Pfam ATPase family associated with various cellular activities (AAA) 385 535 IPR003959 GO:0005524|GO:0016887
Stsc120835g00054 943 Pfam ATPase family associated with various cellular activities (AAA) 697 829 IPR003959 GO:0005524|GO:0016887
Stsc120835g00054 943 Gene3D - 831 917 - -
Stsc120835g00054 943 Gene3D - 655 932 IPR027417 -
Stsc120835g00054 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 608 IPR027417 -
Stsc120835g00054 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 937 IPR027417 -
Stsc120835g00054 943 FunFam Peroxisomal biogenesis factor 6 655 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00054 Stsc-Chr120835 224818 230500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00054 663 896 Calmodulin-binding Proteins AT3G56690 38.723 1.04e-40 160