Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00053 ATGGACTTCCCGAACGACGATTTCCTTGAGCTTCCGATTGGGAACTCCGCCGAGTCCTTGCAGAGGTTTTTGGCTTCGCAGAGAGAGCTCTTCCACAGCCAGATCGATCAGTTTCAGGAAATCGTCGTCACGCAATGCAAACTCACCGGCGTCAATCCTCTCTCTCAAGAAATGGCAGCTGGTGCTCTTTCAATAAACATCGGTAAAAGACCGAGGGATTTATTAAATCCAAAGGCTGTTAATTACATGCAATCTGTTTTTTCTATTAAGGATGCAATCAGCAAGAAAGAATCTCGAGAGATTAGTGCTTTATTTGGTGTCACAGTAACACAGGTGCGTGACTTTTTCAATGGTCAACGCTCTAGAGTGAGGAGATTTGTTCTGTTGTCAAGGGAGAAAGCATTAAAATCTAATTCTCTTGAAGAACCTCATGATGGGCTAATAAACTCTGATCCTATGAGACCAATAAATCCAGCTCCTTTAAATTCTATCATGCCCAGCAATGCTGAAAACACATCCTGTTCAACGCAGGAAGCGGCTTTGTCTGACCTAGATGACTTAGATAAGAAATTTGTTGATAATATTTTTAGTCTAATGGAGAAGGAGGAGTCATTTTCTGGACAGGAGAAACTGATGGAGTGGATATTGACAATACAGAACTTCTCAGTATTATTGTGGTTTCTAACCAGAGGAGGCGTGATGATTTTAGCAACTTGGTTGAGTGTAGCAGCTGTTGAAGAGCAAACAAGTGTCCTTCTTCTTATCTTGAAGGTTCTTTGCCATTTGCCTTTACATAAAGCCCTCCCCACGCACATATCAGCTATATTACAGTGTGTTAATAGATTGCGGTTCTACAGGACATCAGACATATCAAACAGGGCAAGGGTTTTGTTATCAAAGTGGAGCAAATTATTAGCAAGGGACCAAGCAATGAAGAAACCCAATGGTGTTAAACTTTCTAATGATGGTCTAAAAGAGAAAATGTTTTCTCAGAGTATTGGTCAAATTATGGGCTCTGAATCGTGGGATTCAAATATGGACCATGAAGACATACTTGCTCTTTCTAATGCAGACAATCTCAGGAAACTGGAGCCTTCCCAAGCTGTGAAATTGTTGCCATCCACCTCAGATGATTCTAATAAGAAGCTTGCTCTTGGTCTATCTTCATCTCAATCAAATGGCCCTAGAGCGCGCAGAAAAGTGCAACTGGTGGAACAACCAGGCCAAAAATCAGTGACCAGAAGTCCACAGGCAACAAGAGTAGCTCCTGTAAATCAAGGCCGTCCTATGTCTGCTGATGATATACAGAAAGCAAAAATGCGTGCTTTATTCATGCAGAGTAAGTATGCAAAAAATGGGTCTTCCAAGGAAAGTAAAGATGCGAAGATTGATGGTTTGCATAAGCATCCGACAAATCAGGCAGCCAGTATTGTAGCTTGCTCTGCCAAAGTTCCTGTTCCTCCCAAAATTGAAGATGACAAAAAAACGTCTTTGCTTCCCTCTAGTAAGGCCACTAATAAGCCAGAAGCATCTTATTCTAAACCGAGAATGGATGCAAATGAACCAGTGTGGGAGAAGTGCAAGAGGGTGCAAATCCCATGGAAGACACCAGCAGAAGTGAGACTCAGAGATACATGGAGTGTGGGTGCTGGTGAAAATAGCAAAGAGGTTGATGTCCAGAAAAACAGAAACCGCAGGGAGAAGGAAACTATTTATCAGACTGTCCAAGAGATACCATCTAATCCCAAAGAGCCGTGGGACCTCGAGATGGACTATGATGACACTTTGACGCTGGAAATTCCCATTGAACAGCTGCCGGATATTGATGGTACAGAACTAGTAGTTGCCCCTGATGAGGTTGCAACTCATGCTGTTCAAGGGGTGGCCACAACATCTTCGACCAGTAATGTAGCTGATACTGCTCAACCTGACTTGGAACTGCTAGCAGTGTTACTCAAAAATCCAGATTTGGTATTTGCCTTAACTTCGGGACAAGGTGGTATCCAAAGTGAGGAAACCGTGAAGGTACTTGACATGATCAAGAGAGGTGGCTTGAACTTGGGTACAAATGATACAAATCATGGCAATGGCATTAGTGCAAAGACCACAGAGAAGGTGGAAGTCTCACTCCCCTCGCCAACTCCTTCAAGTGATCCAAGAACGGTGCGTGACTTGAGTTCATACTACAACTATTTGTCAAAGATGTTATCATGCTTGATGTCTCCCATTGCAGTTCCATGCACATTCCACTTTAGCCATTTCAGCTCGAAATGGGTATTTCAATCGTGGCCCAAAATGAAATTCCTAACTGAGTTATTTCTATTTCCAAGTTCTTCCTCATCCCTGCCGCCGGTTTTCCTATTTGGTCAAGTTGCTATGTTCCACGGTGTGCTTTGA 2397 0.4293 MDFPNDDFLELPIGNSAESLQRFLASQRELFHSQIDQFQEIVVTQCKLTGVNPLSQEMAAGALSINIGKRPRDLLNPKAVNYMQSVFSIKDAISKKESREISALFGVTVTQVRDFFNGQRSRVRRFVLLSREKALKSNSLEEPHDGLINSDPMRPINPAPLNSIMPSNAENTSCSTQEAALSDLDDLDKKFVDNIFSLMEKEESFSGQEKLMEWILTIQNFSVLLWFLTRGGVMILATWLSVAAVEEQTSVLLLILKVLCHLPLHKALPTHISAILQCVNRLRFYRTSDISNRARVLLSKWSKLLARDQAMKKPNGVKLSNDGLKEKMFSQSIGQIMGSESWDSNMDHEDILALSNADNLRKLEPSQAVKLLPSTSDDSNKKLALGLSSSQSNGPRARRKVQLVEQPGQKSVTRSPQATRVAPVNQGRPMSADDIQKAKMRALFMQSKYAKNGSSKESKDAKIDGLHKHPTNQAASIVACSAKVPVPPKIEDDKKTSLLPSSKATNKPEASYSKPRMDANEPVWEKCKRVQIPWKTPAEVRLRDTWSVGAGENSKEVDVQKNRNRREKETIYQTVQEIPSNPKEPWDLEMDYDDTLTLEIPIEQLPDIDGTELVVAPDEVATHAVQGVATTSSTSNVADTAQPDLELLAVLLKNPDLVFALTSGQGGIQSEETVKVLDMIKRGGLNLGTNDTNHGNGISAKTTEKVEVSLPSPTPSSDPRTVRDLSSYYNYLSKMLSCLMSPIAVPCTFHFSHFSSKWVFQSWPKMKFLTELFLFPSSSSSLPPVFLFGQVAMFHGVL 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00053 798 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 106 721 - -
Stsc120835g00053 798 SUPERFAMILY Homeodomain-like 68 129 IPR009057 -
Stsc120835g00053 798 SMART HOX_1 68 130 IPR001356 GO:0003677
Stsc120835g00053 798 MobiDBLite consensus disorder prediction 380 397 - -
Stsc120835g00053 798 MobiDBLite consensus disorder prediction 406 424 - -
Stsc120835g00053 798 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Stsc120835g00053 798 Gene3D - 68 125 - -
Stsc120835g00053 798 MobiDBLite consensus disorder prediction 380 431 - -
Stsc120835g00053 798 MobiDBLite consensus disorder prediction 688 720 - -
Stsc120835g00053 798 MobiDBLite consensus disorder prediction 488 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00053 Stsc-Chr120835 199418 206455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00053 519 719 Homeobox Transcription Factor Family AT4G02560 51.485 1.08e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00053 - - adu:107492506 1310.05