Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00051 ATGACAGATCCAAGTGCTGAAGTAGTTGCTCTATCACCAACAACATTAATGGCAACAAACAGATTCGTGTGTGAGATATGCAACAAAGGCTTCCAGAGGGACCAGAACCTTCAGCTACACAGAAGAGGCCACAACCTACCATGGAAGCTGAGGCAAAGAACAAGCACAGAGGTGAAGAAGCGTGTGTACGTGTGCCCTGAGCCATCATGTGTTCACCACAACCCAGCACGTGCACTCGGTGACCTCACTGGGATCAAGAAACACTACAGCCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAGTGCTCCAAACGCTATGCTGTTCAGTCTGATTGGAAGGCTCATCAGAAAACATGCGGCACCAGAGAGTATAAGTGTGATTGTGGCACCATCTTCTCCAGAAGAGACAGCTTCATCACTCACAGAGCTTTCTGTGATGCTTTAACTGAAGAGAACAACAGAGTCTCCAACAATCTTCATCATCAGGGTTTAACCAGTGGCATGCCACCAAGCCTTCAATCTTCTCAAATTAATAATCCCTTGAACACCATAACCAACAACAACTCACCAGATCAATTCATCACTGACTATGTTCATAGTCCTTCATTCAAGTCTCTCCCTCTCCCTCAAGAGCTTATCATCCAAACATCATCATCATCACCTTTCAATAATAAGTCCATGTCCTCTAATTCTTGTTCTTCTTCAGCACTTCAGCTGAGTTCAAGTGGCTTCAACAATGTTCTGCTTTCTGCTGCTGCTGCTGCTGTAAGTTCATCATCATCATCAGCTCACATGTCAGCAACTGCTTTGTTGCAGAAAGCAGCTCAAATGGGAGCAACTGCAAGCAACAACAGCATGAACTCACCCATGATGCAGAAAAGCTTTTCTATGGGAACAACTACCATGGCTGGTCCTGATCATGCTACTGTTGTTACAACAAGACCATCACCACCACCACCACCACCATATTCTGGTGCAATCCATGAGTATCATCATCATCATCATCATCAACCTAACATTGCTGGAGTTAGTGGTGGTGGTGCATTTACCAACCAATTGTTGCAGAAAGAAATCGTGTCACAACTGTTTGATGCAAACACTAGCAGTACTAGTAACAATGATATGGGAATGTATGGCCAAATGTTCATGGCAACAGCTACTACTACTGAGCACAGTAATCATAATAATAATAATGGTGGGTTGATGAAGATTAGTGGTAATAATGTAGAACAAGATGTTAGTACTACTACAAGTTCAGGTTTGATTATCCATGCAAGAGATAGTGATAATAATAATAATAACACGATAATGGCGGAGGCATCTAGGTTTGGAGGAGGAGGAGGGGGTGGAAGTGATGATGATATTGCAACTGTTCATGATTTCTTGGGAATTGGTGGAGGTTCAATTGGTTCAACAGGAGCAGCCACAGCTACATTGAATCAGCAGAGGTTGCAGATTATGAATCACTTTCATCACCACATTCCACATCATGCTGCAGATTCAGCCATGGACAAAACTATGTGGGATGTTTGA 1536 0.4329 MTDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVSNNLHHQGLTSGMPPSLQSSQINNPLNTITNNNSPDQFITDYVHSPSFKSLPLPQELIIQTSSSSPFNNKSMSSNSCSSSALQLSSSGFNNVLLSAAAAAVSSSSSSAHMSATALLQKAAQMGATASNNSMNSPMMQKSFSMGTTTMAGPDHATVVTTRPSPPPPPPYSGAIHEYHHHHHHQPNIAGVSGGGAFTNQLLQKEIVSQLFDANTSSTSNNDMGMYGQMFMATATTTEHSNHNNNNGGLMKISGNNVEQDVSTTTSSGLIIHARDSDNNNNNTIMAEASRFGGGGGGGSDDDIATVHDFLGIGGGSIGSTGAATATLNQQRLQIMNHFHHHIPHHAADSAMDKTMWDV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00051 511 Pfam Zinc finger, C2H2 type 22 44 IPR013087 -
Stsc120835g00051 511 Gene3D Classic Zinc Finger 2 68 - -
Stsc120835g00051 511 SUPERFAMILY beta-beta-alpha zinc fingers 21 119 IPR036236 -
Stsc120835g00051 511 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Stsc120835g00051 511 FunFam protein indeterminate-domain 5, chloroplastic-like 76 155 - -
Stsc120835g00051 511 Gene3D Classic Zinc Finger 76 156 - -
Stsc120835g00051 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 44 IPR013087 -
Stsc120835g00051 511 MobiDBLite consensus disorder prediction 314 338 - -
Stsc120835g00051 511 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 483 IPR031140 -
Stsc120835g00051 511 SMART c2h2final6 98 118 IPR013087 -
Stsc120835g00051 511 SMART c2h2final6 22 44 IPR013087 -
Stsc120835g00051 511 SMART c2h2final6 63 93 IPR013087 -
Stsc120835g00051 511 FunFam protein indeterminate-domain 12-like 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00051 Stsc-Chr120835 193974 195649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00051 1 287 IDZ Gene Family AT3G50700 53.628 6.91e-105 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc120835g00051 zf-C2H2 0.0052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00051 - - gmx:100782774 506.138