Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00034 ATGGTCGAAACCAGACGCAGCTCTTCCGCTTCTTCCTCTTCCTCCAAGCGCTCTCTTCCTTCGCCTTCTCCTCCCAACGCTAAACGATCAAAGGTGACCCAGGAGGCCGCGTCAGCTGTTCTTCCCTCTGAGGAGATTCTTGATCCTGCCAACGAATCTGGAAACGGATCTGGTGACTCCGACCTACGTTCCTCTGATCTGCAAGATACGAGTTCGTTGAAAGAGGTTGAGAACGTTTGCGATGCAGACAAGTCTCCTTCTCCGCCCGTTGAGGAGGTCGTCATGGCCTCGCCGGAGTCTTTGGACGCCAAAGAAGTTGAGAAGACCCAGGTGGTTGACGCCGCTGCTGCCGCTGCCGCCGTAGCTGAGCTTCCTCGTTCAAAGAAACGCTCCGCTAATTCTGCCATGGCAGGCCCGAAGGTCACTTGGGGGATGCTTATCTCTCAGTACTCAGAGAATCCTCATCTCACCTTGTGTGAACCTCTGTTCACTGTGGGTCATGGCCGTCAGTGCCATTTATGGCTTAAAGATCCAGCTCTTAGTAATGTTTTGTGCAAGTTGAGCCACATTGAGCATGGAGGTTCGTCTTTTGCATTACTAGAAATCACAGGGAGTAAAGGTACTGTTCTAGTTAATGGCAAGATATATCGAAAGAATGCCCGTCTGGTTTTGAGCGGAGGTGATGAGGTGGTCTTCAATGTTTATGGCAAGCATTCTTATGTGATATATATATGTCAGCAGCTCACCGATATTAATGCTATTACTGGTGTGCCTTCTCTGAGTATTTTAGAAGCCCAAAGTGATCTCGTAAGAGGAATGCACATTGAAGCTAGATCTAGTGACCCTTCAACTGTTGATGGAGCATCGATGTTGGCCTCCTTGTCTAATGTTCACAAAGATATACCACTCATCGCACCTTCTGATAAAACTAGCAAGAATGTCCAACAAACTGCTGGGGTTTCATCACTATCTCCTGGCAATGAGGATGGCATTCCAGATAATGCAGTGAAGGATGTCACCAACATTAATGAAGCAGCTGGAGTTTTTTCCGATGAGAAAACTGTTCCTGCATCCTCTACTACTGTTGAGAAAAATTCTAATCTTGACAGCATGGAAAGTGCTACAGTGAATGCCGATGTTGGGAAGACAGGTGGGGGTAGTGATGCATTACAACCATTGCTGCGGATGTTTTCTGGCCCTTGTCCTGAATTGGATAGTATTTACAAGATGTCTAAAGAGAAAAGTGAGTTAAGGGAACTACTCCTTAAGTATCTTGATTCCTCAACAGTATTGGCTTCTTCTAGGCAGCAGGCTTTAAAGGAGAGTATAAAACAAGGAATTCTTAGTCATGAAGATATTGATGTGTCTTTTGAAACTTTCCCATATTATCTAAGTGATACGACAAAGAACGTTTTGATTACTTCTACTTATATGCATCTGAAATGCAAAGGCTTTGGAAAATATGCTTCAAACCTCTCTTCAGTGTCCCCACGGATATTATTATCTGGTCCCGCAGGCTCTGAAATATACCAGGAAACTTTGTCCAAGGCACTTGCTAAGCATTTTTCTGGCAAGCTACTAATTGTGGATTCTCTTTCACTTTCTGGTGGCACATCATTAACAGAAGGGCACAATGCTAAAGAAGGTGCAAGGCCTGAAAGAACGCCGGCAGTTGCTAAGAGAAGTACTCAGATTTCCACGTCACAGCACAAGAAATCATTCTCTAAACCAGCCTCTAGTGTTGATGCTCAAATTATTGCTGGATCCACATTCTGTTCTCCAGGGTGGGTGAAGCTAGAGACTAATGTTGGATCATCAAAACCCACTATTCTTAAAAATGGTGATCGAGTAAAATTTATTGGTCACATTCATTCTCCCTCATCGGCACAAACTAGAATTCTCCTCGCATTTGAAGATAACAGGTCTTCAAAAATTGGGGTTAGGTTTGATAGATCAATTCCAGATGGCAATGATCTTGGAGGTCTTTGTGAAGGCGACCGCGGTTTCTTTTGTTCCGCTAATAATTTACTGCGGGATGGTTCTGGAGGGGATGACTTTGACAAGATCGCAGTTAATGATATCTTTGAGGTTGTCTCCAATGAGGGTAAAAGTGGTGCACTAATTGTGTTCATTAAAGATATTGAGAAGGCGGTCATTGGTAATTTAGACATTTTGAAGAGTAAACTTGAAACCTTACCACAAAATGTTGTTGTAATTGGCTCGCATACCCAGCTCGACGGCCGAAAGGACAAGACCACACATGCTGGCATTCTGTTAACGAAGCTTGGGGGTAATCCAGCAGCATTACTTGATCTTTCTTTTCCGGATAAGTTCACTAGATTGCTTGATAGGAGCAAAGAAAGTCCAAAAGCAGTAAAGCAACTTACTCGCCTTTTTCCGAACAGGGTGCCAATACAACTTCCTGAGGATGAGGTTTTACTTTCTGATTGGAAGCAGCAGTTGGAACGGGACGTTGAAACTATTAAAGCTCAAGCCAATACTGTCAACATTCGAACCGTTCTCAACCGAATTGGATTGGAATGTCCTGAACTTGAGACTCTTTGCATCAAAGATCAAGCTCTAACAACAGAAAGTGTGGAAAAAATAGTTGGCTGGGCCATAAGTCACCATTGTATGCTTTCATCTGAGGGTTCTGTCAAGGATTCTAAGCCTGTGATATCTGCAGAAAGCCTTAAGTATGGGCTGAACATTCTACAGGGCATTGAAGGTGAAAATAAGAACTCAAAGAAATCGTTGAAGGATGTGGTTACTGAGAACGAATTTGAGAAAAAACTGCTTGCTGATGTTATTCCTCCAACTGATATTGGGGTCACATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTCAGAGACCTGAACTCTTTAGCAAAGGACAGTTGGCTAAGCCCTGCAAGGGAATACTGCTCTTTGGCCCCCCTGGTACTGGAAAGACAATGCTTGCAAAGGCTGTAGCAACCGAGGCTGGAGCTAACTTCATTAACATTTCAATGTCTAGCATCACTTCAAAGTGGTTTGGAGAAGGAGAAAAATACGTCAAAGCCGTCTTTTCTCTAGCCAGCAAGATTGCTCCAAGTGTAATTTTTGTTGATGAGGTTGACAGTATGTTAGGAAGACGTGAAACTCCTGGTGAACATGAGACTATGCGTAAAATGAAGAACGAGTTCATGATGAATTGGGATGGTCTGCGAACAAAAGATAAAGAGCGTGTACTTGTTCTCGCCGCTACAAATAGGCCTTTTGATCTTGATGAAGCTGTTATTAGGAGGCTTCCACGAAGATTTATGGTTAATTTGCCAGATGCTCCAAATAGGGAAAAAATTCTCAGGGTTATCTTAGCAAAAGAAGATTTGACACCTGATGTTGATTTGGAAGCAATAGCAAATATGACCGACGGATATTCAGGGAGTGACCTAAAGAATCTGTGTGTAACAGCAGCTTACTGCCCAATAAGAGAGATCCTGGAAAAGGAAAAGAAAGAGAGAAGTGCGGCATTGGCGGAGAACAGAGCTTTACCTGGATTATGTAGCAGTGCTGATGTCCGTTCCTTAAAGATGGATGATTTTACATATGCACGAGAGCAGGTATGTGCGAGCTTCTCGTCGGAGTCATCGAATATGAACGAGCTACTTCAATGGAACGACCTTTATGGTGAAGGTGGATCGAGGAGGACGAAATCCCTGAGCTATTTCATGTAA 3750 0.4355 MVETRRSSSASSSSSKRSLPSPSPPNAKRSKVTQEAASAVLPSEEILDPANESGNGSGDSDLRSSDLQDTSSLKEVENVCDADKSPSPPVEEVVMASPESLDAKEVEKTQVVDAAAAAAAVAELPRSKKRSANSAMAGPKVTWGMLISQYSENPHLTLCEPLFTVGHGRQCHLWLKDPALSNVLCKLSHIEHGGSSFALLEITGSKGTVLVNGKIYRKNARLVLSGGDEVVFNVYGKHSYVIYICQQLTDINAITGVPSLSILEAQSDLVRGMHIEARSSDPSTVDGASMLASLSNVHKDIPLIAPSDKTSKNVQQTAGVSSLSPGNEDGIPDNAVKDVTNINEAAGVFSDEKTVPASSTTVEKNSNLDSMESATVNADVGKTGGGSDALQPLLRMFSGPCPELDSIYKMSKEKSELRELLLKYLDSSTVLASSRQQALKESIKQGILSHEDIDVSFETFPYYLSDTTKNVLITSTYMHLKCKGFGKYASNLSSVSPRILLSGPAGSEIYQETLSKALAKHFSGKLLIVDSLSLSGGTSLTEGHNAKEGARPERTPAVAKRSTQISTSQHKKSFSKPASSVDAQIIAGSTFCSPGWVKLETNVGSSKPTILKNGDRVKFIGHIHSPSSAQTRILLAFEDNRSSKIGVRFDRSIPDGNDLGGLCEGDRGFFCSANNLLRDGSGGDDFDKIAVNDIFEVVSNEGKSGALIVFIKDIEKAVIGNLDILKSKLETLPQNVVVIGSHTQLDGRKDKTTHAGILLTKLGGNPAALLDLSFPDKFTRLLDRSKESPKAVKQLTRLFPNRVPIQLPEDEVLLSDWKQQLERDVETIKAQANTVNIRTVLNRIGLECPELETLCIKDQALTTESVEKIVGWAISHHCMLSSEGSVKDSKPVISAESLKYGLNILQGIEGENKNSKKSLKDVVTENEFEKKLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFSKGQLAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRETPGEHETMRKMKNEFMMNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRFMVNLPDAPNREKILRVILAKEDLTPDVDLEAIANMTDGYSGSDLKNLCVTAAYCPIREILEKEKKERSAALAENRALPGLCSSADVRSLKMDDFTYAREQVCASFSSESSNMNELLQWNDLYGEGGSRRTKSLSYFM 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00034 1249 MobiDBLite consensus disorder prediction 1 37 - -
Stsc120835g00034 1249 Pfam ATPase family associated with various cellular activities (AAA) 985 1114 IPR003959 GO:0005524|GO:0016887
Stsc120835g00034 1249 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 943 1119 - -
Stsc120835g00034 1249 Gene3D - 1117 1211 - -
Stsc120835g00034 1249 SMART AAA_5 981 1118 IPR003593 GO:0016887
Stsc120835g00034 1249 MobiDBLite consensus disorder prediction 559 573 - -
Stsc120835g00034 1249 SUPERFAMILY SMAD/FHA domain 146 240 IPR008984 GO:0005515
Stsc120835g00034 1249 ProSitePatterns AAA-protein family signature. 1088 1107 IPR003960 GO:0005524|GO:0016887
Stsc120835g00034 1249 MobiDBLite consensus disorder prediction 309 328 - -
Stsc120835g00034 1249 Gene3D - 142 251 - -
Stsc120835g00034 1249 ProSiteProfiles S4 RNA-binding domain profile. 205 245 - -
Stsc120835g00034 1249 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 437 1248 - -
Stsc120835g00034 1249 CDD RecA-like_ATAD1 948 1114 - -
Stsc120835g00034 1249 Gene3D - 943 1222 IPR027417 -
Stsc120835g00034 1249 MobiDBLite consensus disorder prediction 1 102 - -
Stsc120835g00034 1249 Coils Coil 818 838 - -
Stsc120835g00034 1249 MobiDBLite consensus disorder prediction 540 573 - -
Stsc120835g00034 1249 Pfam AAA+ lid domain 1138 1173 IPR041569 -
Stsc120835g00034 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 944 1220 IPR027417 -
Stsc120835g00034 1249 MobiDBLite consensus disorder prediction 53 75 - -
Stsc120835g00034 1249 MobiDBLite consensus disorder prediction 309 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00034 Stsc-Chr120835 123552 132751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00034 980 1185 Calmodulin-binding Proteins AT3G56690 36.190 1.30e-31 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00034 - - gmx:100801477 1625.91