Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00029 ATGTCACCTGCAACAACTGCACCGTGGATCACCTCTCTGTCGTGTTCATCTCCAAGCTCAGGGGACACTCTACCTCAATGGCTCAGATTCATTTTCCTATCTCCATGTCCTCAGAGAGCTATGGTGTCTGCCATTGATGTCATACTCTTGCTCACTCTCTTTGTGTTTGCCCTGATCAAGCTCTATTCTAGGTTCACCTCCTCCACCAATGAACTCAACAAGCCACTTATCAGAAATAATAATAATAATAATAACACACCCTTTGTCACAGTAACCATATGGTTTAACCTTACTTTAATTGCAACTTTTGTTTTGGCCTTATTGTACACCATTGCTTGTGTTCTGGTATTTACCAGTTCAACTGAGATTCCATGGAAACAAGTAGATGGAATGTTCTGGTTAGTACAGGCCATAACACAACTAGTACTTGCTGTCTTAATCATCCATGAGAAAAGATTCCAAGCTGTAACACATCCTCTAACTCTTAGAGTTTATTGGATTGTGTATTTTATTTTTACTTGTTTGTTTGTGGCTTCTGGTGTAATACGTTTGGTCTCTGTGGATGTGGATGGAACCAAAGAGTTCATATTCAAGGTGGATGACATAGTTTCTTTCACATCCCTGCCTCTCTCGCTGTTTCTTCTCTTTGTCGCAATCAAAGGGTCCACTGGCATTGTTTCGAATGAGGAAACACAATCACTTGTTGCTGAGGAAACTAAGCTATATGATGATGATACTCTGGAAAAATCTGGAGTCACTGCCTATGCTTCGGCTTCTATAGTATCCAGGGCATTTTGGCTTTGGATAAACCCTTTGTTGAGTAAAGGGTACAAGTCCCCATTGAAGATTGATGACATTCCAACCCTTTCACCCTTGCATAGAGCTGAGAGGATGTCTGTTATCTTTGAATCAAAATGGCCAAAATCAAATGAAAGGACGAAGCATCCAGTTCGGGTCGCATTGGTCCGGTGCTTCTGGAGGGAATTGGCCTTCACTGCATTCCTTGCTGTTGTTAGGATCTCGGTCATGTTTGTGGGGCCAATTCTTATACAAAGCTTTGTTGATTTCACTTCAGGGAAGGGAAGTTCTATCTATGAAGGGTACTACCTGGTGATGATCCTCCTTGTTGCTAAGTTTGTGGAAGTTTTGACCAATCACCATTTCAACTTCAATGCTCAGAAGCTTGGAATGCTTATCAGATGCACACTCATCACTTCTCTGTACAAGAAGGGCCTGAAGCTTTCTTGCTCCTCAAGGCAAGATCATGGTATTGGGACTATTGTGAATTACATGGCTGTTGATGCTCAGCAACTCTCTGATATGATGCTTCAGTTGCATTCCGTGTGGGTGACTCCACTTCAAGTCACTGTTGCCTTGTTTCTACTTTATAATGCTTTGGGTGCCTCTGCAGTTGCGGCCTTACTCGGTCTTCTTGGTGTTCTTGTATTTGCTGTCTTTGGCACAAAGAGAAACAACCGTTTTCAGTTCAATGTGATGAAGAATCGCGACTCAAGAATGAAAGCCATGAATGAGATGCTTAACTACATGCGTGTGATCAAGTTCCAGGCTTGGGAGGAGCATTTCAATGGGAGAATCATGGGGTTCCGTGAGTCAGAGTTTGAGTGGTTGTCAAAGTTCATGTATTCGTTCTGTGGCAACATTATTGTGATGTGGAGCACACCATTGTTGATATCAACTCTAACATTCGGCGCAGCTCTTCTGCTTGGAGTCCGGCTCGACACAACCACGGTTTTCACCACAACAACAATACTTAAGATCTTGCAGGAACCAATTAGGACGTTTCCACAGTCTATGATATCTCTTTCGCAAGCAATGATATCGCTGGGAAGGCTAGACAGATTCATGATGAGCAGGGAATTATCAAATGATTCAGTTGAAAGAGAGGAAGGCTGTGGTGGACACACTGCTGTGGAGGTCTGTGATGGGACTTTCAGCTGGGATGATGACAGCCTACAGCATGACTTGAAGGATATCAATCTGCAAATCAGAAAAGGGGATCTTACAGCAATTGTTGGGACTGTAGGATCTGGAAAGTCATCTCTCTTGGCATCAATTCTTGGTGAAATGCGCAAAGTTTCTGGAAGGGTTCGGGTTTGTGGAAGTACTGCTTATGTTGCACAGACATCTTGGATTCAGAATGGGACCATTGAAGAAAACATTCTCTTTGGTATGCCAATGAACAGACACAAGTACAATGAAGTCATCAGAGTTTGTTGCCTGGAGAAAGATTTGGAAATGATGGAGTTTGGGGATCAGACTGAGATCGGAGAGCGCGGCATCAACCTCAGCGGTGGACAGAAGCAGCGTATACAACTCGCCAGGGCTGTCTACCAAGACTGTGATATCTATCTTCTTGATGATGTCTTTAGTGCTGTTGATGCTCACACCGGTTCTGAAATATTTAAGGAATGTGTTAGGGGGGCTTTAAAAGGAAAGACTATAATCCTTGTAACACACCAAGTAGATTTTTTACATAATGTTGATCTTATATTGGTCATGAAGGATGGAATGATAGTCCAATCAGGAAAGTATGATGATCTACTAGATTCTGGACTGGATTTCAAAGCTTTGGTTGTTGCACACGAAACCTCCATGGAAGTAGTAGAGCAAGGCGCAGCGACTTCTGGTGAAAATCTGAATAATCCATCAAAATCTCCAAGAGAAGCTTCTTCTGGTCACGGAGGAGCCAATGGTGAGAGAAAGTCTCTTGATCAGCCAAGGTCCAGCAAGGGAAGTTCTAAACTGATAAAAGAAGAGGAAAAGGAAACAGGAAAAGTTAGCTTGAATATGTACAAACTGTACCTGACTGAGGCTTTTGGGTGGTGGGGCATTACAGGAGTATTGATTCTTTCTTTGCTGTGGCAAGGATCTTTGATGGCAAGTGATTATTGGCTAGCATATGAAACATCAGAAGAGCGTGCTCAAGTGTTCAACCCTACTTTCTTCATTTCCATCTATGCAAGTATCACTCTTGTTTCAGTTATTTTGGTAGTTATAAGATGCTACTCATACACATTCATGGGGCTAAAGACGGCACAACTTTTCTTCACTCAAATTCTTAATAGCATCCTTCATGCACCCATGTCTTTCTTCGACACTACACCATCCGGGAGAATTCTAAGTAGGGCATCCACTGACCAGACCAATGTTGATGCTCTTCTTCCCTTGTTTCTGGGAATTGCTATTGCCATGTACATTACAGCGCTCAGCATCTTCATCGTCACCTGTCAAAATGCATGGCCAACAGCATTCTTGTTGATTCCTCTTGTTTGGTTGAACATATGGTACCGGAGTTATTTTCTTGCTTCATCTCGGGAGTTAACTCGACTGGATCAAATTACCAAAGCGCCTGTTATTCATCACTTCTCTGAAACCATTTCGGGAGTCATGACTGTCCGAGCATTCGGAAAGCAGAAGAGGTTTACTGAAGACAATGTTAGACGGGTGAATTCTAATTTAAGAATGGATTTCCACAACTATTGTTCCAATGAATGGTTGGGATTCCGCATGGAATTGCTTGGAAGCTTGGTCTTCTGCATTTCAGCCATGTTCATGATCCTCTTACCTAGCAATATCATAAAGCCAGAAAATGTTGGTTTATCTCTTTCTTATGGTTTGTCATTAAATGGGGTCTTGTTCTTTGCGGTGTACACGAGCTGCATCATTGAAAACAAAATGGTATCCGTTGAGCGGATAAAACAGTTTACAAATATTCCATCAGAACCTGCATGGATCATTAAGGATCGTTTGCCTCCTTCTAATTGGCCAGGTCAAGGCAATGTTGATATCAAAGACTTGCAGGTTCGGTATCGTCCAAACACTCCTCTGGTTCTCAAGGGCATCACTCTAGGCATTAATGGAGGAGAAAAGATTGGTGTTGTAGGCCGAACAGGAAGTGGAAAATCAACTCTAATTCAAGTTTTCTTCAGGCTGGTGGAACCTTCAGGAGGCAAAATAATTGTTGATGGCATTGACATATCCGTGTTGGGGCTTCATGATCTAAGATCTCGCTTCGGTATCATTCCTCAGGAGCCTGTCCTTTTCGAAGGAACTGTCAGAAGCAATATTGATCCAACTGGACAGTACACAGATGAAGATGTCTGGAAGAGTTTGGAAAGGTGTCAACTAAAAGAGGCAGTGGCTGCTAAGCCTGAAAAACTTGACTCCTTAGTCGTAGATAATGGAGAGAACTGGAGTGTGGGGCAGAGGCAGTTGCTTTGTTTAGGGCGTGTTTTGCTTAAGCGAAGCCGGCTCTTGTTTATGGACGAAGCAACTGCTTCTGTTGATTCTCAAACCGATGGTGTGATTCAGAAGATCATAAGAGAGGAATTTGCAGCATGTACCATCATCAGCATTGCTCACAGAATACCCACAGTCATGGACTGTGATAGAGTTTTAGTGGTAGATGCAGGGAGAGCAAAAGAATTTGATAAGCCTTCAAACTTGCTTCAAAGGCCATCTCTGTTTGGGGCATTGGTTCAGGAGTATGCTAACCGTTCCACAGATCTATAA 4533 0.4278 MSPATTAPWITSLSCSSPSSGDTLPQWLRFIFLSPCPQRAMVSAIDVILLLTLFVFALIKLYSRFTSSTNELNKPLIRNNNNNNNTPFVTVTIWFNLTLIATFVLALLYTIACVLVFTSSTEIPWKQVDGMFWLVQAITQLVLAVLIIHEKRFQAVTHPLTLRVYWIVYFIFTCLFVASGVIRLVSVDVDGTKEFIFKVDDIVSFTSLPLSLFLLFVAIKGSTGIVSNEETQSLVAEETKLYDDDTLEKSGVTAYASASIVSRAFWLWINPLLSKGYKSPLKIDDIPTLSPLHRAERMSVIFESKWPKSNERTKHPVRVALVRCFWRELAFTAFLAVVRISVMFVGPILIQSFVDFTSGKGSSIYEGYYLVMILLVAKFVEVLTNHHFNFNAQKLGMLIRCTLITSLYKKGLKLSCSSRQDHGIGTIVNYMAVDAQQLSDMMLQLHSVWVTPLQVTVALFLLYNALGASAVAALLGLLGVLVFAVFGTKRNNRFQFNVMKNRDSRMKAMNEMLNYMRVIKFQAWEEHFNGRIMGFRESEFEWLSKFMYSFCGNIIVMWSTPLLISTLTFGAALLLGVRLDTTTVFTTTTILKILQEPIRTFPQSMISLSQAMISLGRLDRFMMSRELSNDSVEREEGCGGHTAVEVCDGTFSWDDDSLQHDLKDINLQIRKGDLTAIVGTVGSGKSSLLASILGEMRKVSGRVRVCGSTAYVAQTSWIQNGTIEENILFGMPMNRHKYNEVIRVCCLEKDLEMMEFGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGSEIFKECVRGALKGKTIILVTHQVDFLHNVDLILVMKDGMIVQSGKYDDLLDSGLDFKALVVAHETSMEVVEQGAATSGENLNNPSKSPREASSGHGGANGERKSLDQPRSSKGSSKLIKEEEKETGKVSLNMYKLYLTEAFGWWGITGVLILSLLWQGSLMASDYWLAYETSEERAQVFNPTFFISIYASITLVSVILVVIRCYSYTFMGLKTAQLFFTQILNSILHAPMSFFDTTPSGRILSRASTDQTNVDALLPLFLGIAIAMYITALSIFIVTCQNAWPTAFLLIPLVWLNIWYRSYFLASSRELTRLDQITKAPVIHHFSETISGVMTVRAFGKQKRFTEDNVRRVNSNLRMDFHNYCSNEWLGFRMELLGSLVFCISAMFMILLPSNIIKPENVGLSLSYGLSLNGVLFFAVYTSCIIENKMVSVERIKQFTNIPSEPAWIIKDRLPPSNWPGQGNVDIKDLQVRYRPNTPLVLKGITLGINGGEKIGVVGRTGSGKSTLIQVFFRLVEPSGGKIIVDGIDISVLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDEDVWKSLERCQLKEAVAAKPEKLDSLVVDNGENWSVGQRQLLCLGRVLLKRSRLLFMDEATASVDSQTDGVIQKIIREEFAACTIISIAHRIPTVMDCDRVLVVDAGRAKEFDKPSNLLQRPSLFGALVQEYANRSTDL 1510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00029 1510 FunFam ABC transporter C family member 10 313 626 - -
Stsc120835g00029 1510 Gene3D - 1252 1500 IPR027417 -
Stsc120835g00029 1510 SUPERFAMILY ABC transporter transmembrane region 321 622 IPR036640 GO:0005524|GO:0016020
Stsc120835g00029 1510 FunFam ABC transporter C family member 3 1251 1502 - -
Stsc120835g00029 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1261 1501 IPR027417 -
Stsc120835g00029 1510 MobiDBLite consensus disorder prediction 877 925 - -
Stsc120835g00029 1510 CDD ABC_6TM_ABCC_D1 331 618 IPR044746 GO:0140359
Stsc120835g00029 1510 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1268 1502 IPR003439 GO:0005524
Stsc120835g00029 1510 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 330 610 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120835g00029 1510 MobiDBLite consensus disorder prediction 910 925 - -
Stsc120835g00029 1510 Gene3D ABC transporter type 1, transmembrane domain 309 621 IPR036640 GO:0005524|GO:0016020
Stsc120835g00029 1510 Gene3D ABC transporter type 1, transmembrane domain 914 1249 IPR036640 GO:0005524|GO:0016020
Stsc120835g00029 1510 Pfam ABC transporter 662 795 IPR003439 GO:0005524
Stsc120835g00029 1510 FunFam ABC transporter C family member 5 914 1249 - -
Stsc120835g00029 1510 CDD ABCC_MRP_domain2 1266 1486 - -
Stsc120835g00029 1510 CDD ABCC_MRP_domain1 644 843 - -
Stsc120835g00029 1510 CDD ABC_6TM_ABCC_D2 951 1243 IPR044726 GO:0140359
Stsc120835g00029 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 864 IPR027417 -
Stsc120835g00029 1510 Pfam ABC transporter 1285 1433 IPR003439 GO:0005524
Stsc120835g00029 1510 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 256 1503 - -
Stsc120835g00029 1510 SUPERFAMILY ABC transporter transmembrane region 939 1248 IPR036640 GO:0005524|GO:0016020
Stsc120835g00029 1510 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 953 1231 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120835g00029 1510 FunFam ABC transporter C family member 4 627 886 - -
Stsc120835g00029 1510 Gene3D - 622 886 IPR027417 -
Stsc120835g00029 1510 Pfam ABC transporter transmembrane region 331 597 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120835g00029 1510 Pfam ABC transporter transmembrane region 984 1209 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc120835g00029 1510 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 644 867 IPR003439 GO:0005524
Stsc120835g00029 1510 MobiDBLite consensus disorder prediction 877 897 - -
Stsc120835g00029 1510 SMART AAA_5 1294 1478 IPR003593 GO:0016887
Stsc120835g00029 1510 SMART AAA_5 671 852 IPR003593 GO:0016887
Stsc120835g00029 1510 ProSitePatterns ABC transporters family signature. 769 783 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00029 Stsc-Chr120835 102190 107967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00029 644 860 Calmodulin-binding Proteins AT2G36910 33.047 7.25e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00029 - K05666 gmx:100793361 2406.71