Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00027 ATGAAGTTCTGCAAGAGATACCAGGAGTACATGCAAGCCCAGGAGAAGAAGAAGCTTCCTGCTCTTGGCTTCAAGAAGCTCAAGAAGATCTTGAAGCGCTGCTCCCGACACACCACATCATCATCATCTTCATCTTCATCTCAATCCCTTCTTAACAATGGAGGATCATCTTCTCTTCCACTCAACACCTGCCCAGATCAATGCCCAGTGTGTGATGGGACCTTCTTCCCTTCCCTTCTCACTGAAATGTCAGCCGTATTAGGCTGCTTTAACCAGCGGGCTCAGAAATTGTTGGACCTTCACCTCGCTTCTGGCTTCAGAAAATACTTCTTCTGGTTCAAAGGCAAATCCAAAGGGAGCCACAACACTCTTATTCAAGAAGGGAAAGACCTTGTCACTTATGCACTCATTAACGCCGTTGCAATCAGAAAAATACTTAAGAAATATGATAAGGTTCATTATTCCAAGCAAGGACAAATGTTCAAGTCACAGGTCCAAAGTATGCACAAGGAAATTCTTCAGAGTCCTTGGCTTTGTGAGCTTATGGCTTTTCACATCAATCTTAGGGAAACTAAGGACAAGTCTAGGAAGGCACATGCTTTCTTTGGTGGATGTTCTCTCACGTTTAAGGATGGAAAACCAGCTCTCACTTGTGAGCTACTTGATTCCACCAACATTGATATCGACTTGACTTGTTCTATATGCCTGGACACAGTGTTTGATCCAGTTTCTCTAACCTGTGGCCACATATTCTGCTATATTTGTGCTTGCTCTGCTGCATCAGTATCTATTGTGGATGGAATTAAGGCATCCGATTCTAAGAAGAAATGTCCCTTGTGCCGAGAGAGTGGAGTGTATGAAGGAGCTGTGCGCTTGGAAGAACTAAATATACTGTTAGGCCGAAACTGCCAGGAATATTGGGAGGAAAGGGCTCAAGCAGAGAGAGTAGAGAGGCTTAAACAAATAAAGGAACACTGGGAATCGCAATGCAGGTTATTCGTAGGCGTCTAA 1011 0.4402 MKFCKRYQEYMQAQEKKKLPALGFKKLKKILKRCSRHTTSSSSSSSSQSLLNNGGSSSLPLNTCPDQCPVCDGTFFPSLLTEMSAVLGCFNQRAQKLLDLHLASGFRKYFFWFKGKSKGSHNTLIQEGKDLVTYALINAVAIRKILKKYDKVHYSKQGQMFKSQVQSMHKEILQSPWLCELMAFHINLRETKDKSRKAHAFFGGCSLTFKDGKPALTCELLDSTNIDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGIKASDSKKKCPLCRESGVYEGAVRLEELNILLGRNCQEYWEERAQAERVERLKQIKEHWESQCRLFVGV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00027 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 333 IPR013083 -
Stsc120835g00027 336 Pfam Zinc finger, C3HC4 type (RING finger) 229 282 - -
Stsc120835g00027 336 CDD SPX_BAH1-like 2 159 - -
Stsc120835g00027 336 ProSitePatterns Zinc finger RING-type signature. 247 256 IPR017907 -
Stsc120835g00027 336 SMART ring_2 232 280 IPR001841 -
Stsc120835g00027 336 SUPERFAMILY RING/U-box 224 284 - -
Stsc120835g00027 336 CDD RING-HC_BAH1-like 222 295 - -
Stsc120835g00027 336 ProSiteProfiles Zinc finger RING-type profile. 232 281 IPR001841 -
Stsc120835g00027 336 ProSiteProfiles SPX domain profile. 1 163 IPR004331 -
Stsc120835g00027 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 335 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00027 Stsc-Chr120835 97019 99956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00027 222 281 C3H Transcription Factor Family AT4G28270 40.299 1.72e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00027 K16275 - gmx:100797432 554.288