Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00026 ATGAAGTTCTGCAAGAGATACCAGGAGTACATGCAAGCCCAGGAGAAGAAGAAGCTTCCTGCTCTTGGCTTCAAGAAGCTCAAGAAGATCTTGAAGCGCTGCTCCCGACACACCACATCATCATCATCTTCATCTTCATCTCAATCCCTTCTTAACAATGGAGGATCATCTTCTCTTCCACTCAACACCTGCCCAGATCAATGCCCAGTGTGTGATGGGACCTTCTTCCCTTCCCTTCTCACTGAAATGTCAGCCGTATTAGGCTGCTTTAACCAGCGGGCTCAGAAATTGTTGGACCTTCACCTCGCTTCTGGCTTCAGAAAATACTTCTTCTGGTTCAAAGGCAAATCCAAAGGGAGCCACAACACTCTTATTCAAGAAGGGAAAGACCTTGTCACTTATGCACTCATTAACGCCGTTGCAATCAGAAAAATACTTAAGAAATATGATAAGGTTCATTATTCCAAGCAAGGACAAATGTTCAAGTCACAGGTCCAAAGTATGCACAAGGAAATTCTTCAGAGTCCTTGGCTTTGTGAGCTTATGGCTTTTCACATCAATCTTAGGGAAACTAAGGACAAGTCTAGGAAGGCACATGCTTTCTTTGGTGGATGTTCTCTCACGTTTAAGGATGGAAAACCAGCTCTCACTTGTGAGCTACTTGATTCCACCAACATTGATATCGACTTGACTTGTTCTATATGCCTGGACACAGTGTTTGATCCAGTTTCTCTAACCTGTGGCCACATATTCTGCTATATTTGTGCTTGCTCTGCTGCATCAGTATCTATTGTGGATGGAATTAAGGCATCCGATTCTAAGAAGAAATGTCCCTTGTGCCGAGAGAGTGGAGTGTATGAAGGAGCTGTGCGCTTGGAAGAACTAAATATACTGTTAGGCCGAAAGTATGATCCTATTTGTTCAATTACAAAGCTTAGTTTAAATTTTGAAGGAGTGCTTGCTTGCATTGTATCCTTTGTAAGTGTGTAA 990 0.4273 MKFCKRYQEYMQAQEKKKLPALGFKKLKKILKRCSRHTTSSSSSSSSQSLLNNGGSSSLPLNTCPDQCPVCDGTFFPSLLTEMSAVLGCFNQRAQKLLDLHLASGFRKYFFWFKGKSKGSHNTLIQEGKDLVTYALINAVAIRKILKKYDKVHYSKQGQMFKSQVQSMHKEILQSPWLCELMAFHINLRETKDKSRKAHAFFGGCSLTFKDGKPALTCELLDSTNIDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVDGIKASDSKKKCPLCRESGVYEGAVRLEELNILLGRKYDPICSITKLSLNFEGVLACIVSFVSV 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00026 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 302 IPR033326 -
Stsc120835g00026 329 Pfam Zinc finger, C3HC4 type (RING finger) 229 282 - -
Stsc120835g00026 329 SUPERFAMILY RING/U-box 224 284 - -
Stsc120835g00026 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 312 IPR013083 -
Stsc120835g00026 329 CDD SPX_BAH1-like 2 159 - -
Stsc120835g00026 329 ProSitePatterns Zinc finger RING-type signature. 247 256 IPR017907 -
Stsc120835g00026 329 SMART ring_2 232 280 IPR001841 -
Stsc120835g00026 329 CDD RING-HC_BAH1-like 222 295 - -
Stsc120835g00026 329 ProSiteProfiles Zinc finger RING-type profile. 232 281 IPR001841 -
Stsc120835g00026 329 ProSiteProfiles SPX domain profile. 1 163 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00026 Stsc-Chr120835 97019 99956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00026 222 281 C3H Transcription Factor Family AT4G28270 40.299 1.16e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00026 K16275 - gmx:100797432 490.345