Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00023 ATGAGTAGACGTGGGAGCAGAACAGTATACGTTGGGAACCTCCCTGGTGATATTCGTGAAAGAGAAGTAGAAGACTTGTTTTCAAAGTATGGACATATAACTCACATTGATCTCAAGGTTCCACCAAGGCCTCCGGGTTATGCATTTGTAGAGTTTGAAGATTATCAAGATGCTGAGGATGCAATTCGAGGGCGTGATGGATATGATTTTGATGGACACCGATTGCGGGTGGAGCCTGCACACGGTGGGCGGGGCCACTCATCTTCGAGAGATCGATATAGTAGTCACAGCAACGGTCGAGGTGGTCGAGGTGTATCTAGGCGCTCGGAGTATCGCGTTCTGGTCACTGGATTGCCCTCTTCTGCTTCATGGCAGGATCTTAAAGATCACATGAGAAAGGCTGGGGATGTTTGCTTTTCCCAAGTTTTCCATGATGGAAGAGGAACTACTGGGATTGTGGATTACACAAATTATGATGACATGAAATATGCTATCAAGAAGCTTGACGACTCTGAGTTTCGGAATGCATTTTCCCGGGGCTATGTTCGGGTGAGGGAATATGATTCAAGGCGGGATTCCTCTAGAAGTCCTAGTCGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGTCGCAGCCGTAGCCGCAGTCGCAGCCGCAGCCGTAGTTACAGTCGCGGCCGGAGCCCAAGCAAATCTCCAAAGGGGAAGTCATCACCACGGTCACCAGCTAAATCTCCACCAAGATCTGCTTCTCGTTCAAGATCAAGGTCTCGTTCTTTATCGGGATCACGATCAAGGTCTAGGTCTCCGTTACCTGTGCGTAACAAAAGCCCAAAAAGAAGCCCAAAAAGACGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGCAGGAGCAAGAGTTTGTCCCGGTGA 912 0.4923 MSRRGSRTVYVGNLPGDIREREVEDLFSKYGHITHIDLKVPPRPPGYAFVEFEDYQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSRSRSYSRGRSPSKSPKGKSSPRSPAKSPPRSASRSRSRSRSLSGSRSRSRSPLPVRNKSPKRSPKRRSASRSPSRSRSRSKSLSR 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00023 303 SUPERFAMILY RNA-binding domain, RBD 6 176 IPR035979 GO:0003676
Stsc120835g00023 303 CDD RRM1_SF2_plant_like 8 78 - -
Stsc120835g00023 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Stsc120835g00023 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Stsc120835g00023 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Stsc120835g00023 303 MobiDBLite consensus disorder prediction 186 303 - -
Stsc120835g00023 303 CDD RRM2_SF2_plant_like 111 186 - -
Stsc120835g00023 303 Gene3D - 2 110 IPR012677 -
Stsc120835g00023 303 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Stsc120835g00023 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Stsc120835g00023 303 Gene3D - 111 188 IPR012677 -
Stsc120835g00023 303 MobiDBLite consensus disorder prediction 73 108 - -
Stsc120835g00023 303 MobiDBLite consensus disorder prediction 225 274 - -
Stsc120835g00023 303 MobiDBLite consensus disorder prediction 206 224 - -
Stsc120835g00023 303 MobiDBLite consensus disorder prediction 277 292 - -
Stsc120835g00023 303 MobiDBLite consensus disorder prediction 73 107 - -
Stsc120835g00023 303 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Stsc120835g00023 303 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 6 268 - -
Stsc120835g00023 303 SMART rrm1_1 8 78 IPR000504 GO:0003723
Stsc120835g00023 303 SMART rrm1_1 112 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00023 Stsc-Chr120835 84437 88942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00023 2 195 Eukaryotic Initiation Factors Gene Family AT4G34110 25.123 6.10e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00023 K12890 - gmx:100789847 341.658