Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00015 ATGTCTGAACCCAATGCGGGCGCTGAAACCCCTCAGAACATGACCATCTACATCAACAACCTTAATGAAAAGATTAAGCTTGATGAGTTGAAGAAGTCGTTGCACGCTGTTTTCTCTCAGTTCGGGAAGATACTGGAAGTGCTGGCGTTCAAGACTCTGAAGCACAAGGGTCAAGCTTGGGTGGTGTTTGAGGATGTTAATTCCGCATCCAATGCTCTTAGGCAAATGCAAGGTTTCCCCTTCTACGACAAGCCAATGAAAATACAGTATGCAAAAACTAAATCAGATATAATAGCAAAAGCTGATGGTACCTTTGTTCCAAGAGAAAAACGGAAGAGGCATGATGACAAAGGCAAAAAACGTAAGGATCAACATGATCCTAGTTTAGCTGGAATGGGTGTAAATCCAGCTTATGCCGGTGCCTATGGTGCAGCTCCTGCTCTATCCCAGGTATCTTATCCAGGTGGTGCAAAATCTATGGTACCTGAGGCTCCTGCCCCACCAAATAATATTCTCTTCATTCAAAATCTGCCCAATGAAACAACTCCCATGATGCTGCAAATGCTCTTTCTTCAATATCCTGGTTTCAAGGAAGTCAGGATGGTGGAAGCGAAGCCAGGAATTGCATTTGTGGAATATGGAGATGAGATGCAATCAACAGTAGCAATGCAGGCCCTACAGGGTTTCAAGATAACACCACATAACCCGATGTTGATAACTTATGCCAAGAAATAG 735 0.4367 MSEPNAGAETPQNMTIYINNLNEKIKLDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVNSASNALRQMQGFPFYDKPMKIQYAKTKSDIIAKADGTFVPREKRKRHDDKGKKRKDQHDPSLAGMGVNPAYAGAYGAAPALSQVSYPGGAKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQALQGFKITPHNPMLITYAKK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00015 244 CDD RRM1_U1A_like 15 92 - -
Stsc120835g00015 244 SMART rrm1_1 15 89 IPR000504 GO:0003723
Stsc120835g00015 244 SMART rrm1_1 171 240 IPR000504 GO:0003723
Stsc120835g00015 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Stsc120835g00015 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 232 IPR000504 GO:0003723
Stsc120835g00015 244 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 11 93 - -
Stsc120835g00015 244 Gene3D - 158 244 IPR012677 -
Stsc120835g00015 244 FunFam U1 small nuclear ribonucleoprotein A 8 113 - -
Stsc120835g00015 244 Gene3D - 7 113 IPR012677 -
Stsc120835g00015 244 SUPERFAMILY RNA-binding domain, RBD 11 233 IPR035979 GO:0003676
Stsc120835g00015 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 93 IPR000504 GO:0003723
Stsc120835g00015 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 244 IPR000504 GO:0003723
Stsc120835g00015 244 CDD RRM2_U1A_like 168 240 - -
Stsc120835g00015 244 FunFam U2 small nuclear ribonucleoprotein B'' 161 244 - -
Stsc120835g00015 244 MobiDBLite consensus disorder prediction 103 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00015 Stsc-Chr120835 52019 55261 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00015 3 96 Eukaryotic Initiation Factors Gene Family AT4G34110 30.208 3.11e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00015 K11091 - gmx:100777062 421.009