Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00010 ATGGGAATCGATTTGAAAGCAGGAGGTAAGTCCAAGAAGACCAAGCGTACAGCCCCCAAATCCGATGATATCTACCTCAAGCTCCTCGTCAAGCTATACCGTTTCCTTGTTCGGAGGACTGACAGTAACTTCAACGCCGTCATCCTCAAGCGCCTTTTCATGAGCAAAGTCAACAAGGCACCGCTATCACTTTCTCGCTTGATCCGTTACATGAAGGGAAAGGAGAATAAGATAGCTGTAGTTGTTGGAGCTGTGACAGATGACATTAGGGTCTATGAAGTGCCTGCATTGAAGCTTGCTCTTAGAGCTCCTCTTGGCCAGAACACGGTTCTTCTCAGAGGTCCTAAGAATGCCCGTGAGGCTGTCAAGCACTTTGGACCAGCTCCTGGTGTGCCCCATAGTAACACCAAGCCCTATGTTCGTTCAAAGGGACGGAAATTTGAGTGTGCTAGAGGAAGAAGGAATAGCAAAGGCTTCAGAGTTTGA 486 0.4815 MGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNKAPLSLSRLIRYMKGKENKIAVVVGAVTDDIRVYEVPALKLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKFECARGRRNSKGFRV 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00010 161 PANTHER 60S RIBOSOMAL PROTEIN L18 1 102 IPR000039 GO:0003735|GO:0005840|GO:0006412
Stsc120835g00010 161 Pfam Ribosomal protein 60S L18 and 50S L18e 2 100 IPR021131 -
Stsc120835g00010 161 Gene3D - 1 99 - -
Stsc120835g00010 161 SUPERFAMILY Ribosomal proteins L15p and L18e 20 95 IPR036227 -
Stsc120835g00010 161 Gene3D - 100 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00010 Stsc-Chr120835 33181 34667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00010 3 161 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 67.204 4.85e-82 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00010 K02883 - gmx:100306301 286.189