Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00008 ATGGCATTGGATCCAGATATTGAAGAAAAGTATGTACACAACAGCAAGGTCATGGTAGGCTCTGCAATTCTTCTCGTTATACTCATCTTTGTAATCGTTTTATATCGTGCCTATGCTCACTTCTGCGCACGCCGCCGCCGCCATCTCTTCCCTCATACTCTTCCGGCTACTTCCAATTCCGCCACTGACGCACCTGCTTTCAACGACCGACTCGATCCTACCATACTCAAGTCCCTACCTACCTTCACTTTCTCCTCCTTCGCGCACCGCCCTCTCCAAGACTGCGCCGTCTGCCTCTCCGAGTTTGAAGACGGCGACAAGGGCCGTGTGCTGCCGAATTGCAACCACGCTTTCCACTGCCAATGCATCGACGCGTGGTTCGCATCTCACTCCAACTGCCCTCTCTGCCGGTCACCGGTTACCGCGCCGGTTGAAACGTGCTCAATTCCGGTTAAGGTTGAAGTGGAAGCTGGTGGTTGTTCGTCGCTTCCTGCGCCTGTGATGTGCCCTAGAAAGCCGTTGAATGTGGTCCTGGAGATTCCGGAAGAGGAGAGAGGGTTGGATCATCGGATTCTTTCTTTGAAGAGGTTTTGCAGCGTGTAG 603 0.5323 MALDPDIEEKYVHNSKVMVGSAILLVILIFVIVLYRAYAHFCARRRRHLFPHTLPATSNSATDAPAFNDRLDPTILKSLPTFTFSSFAHRPLQDCAVCLSEFEDGDKGRVLPNCNHAFHCQCIDAWFASHSNCPLCRSPVTAPVETCSIPVKVEVEAGGCSSLPAPVMCPRKPLNVVLEIPEEERGLDHRILSLKRFCSV 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00008 200 SMART ring_2 95 136 IPR001841 -
Stsc120835g00008 200 Pfam Ring finger domain 94 137 IPR001841 -
Stsc120835g00008 200 CDD RING-H2_EL5-like 94 137 - -
Stsc120835g00008 200 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Stsc120835g00008 200 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 141 IPR044675 -
Stsc120835g00008 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 143 IPR013083 -
Stsc120835g00008 200 SUPERFAMILY RING/U-box 75 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00008 Stsc-Chr120835 26374 26976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00008 9 155 Rapid Response to Elicitors AT3G16720 38.650 4.53e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00008 - - gmx:102665377 229.95