Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00006 ATGACATTCCGAAACACAGCTGGGCCTGAGAAGCACCAAGCGGTAGCGGTTAGAAACGGAGCAGATTTCTCCACATTCTACAGCTGCAGCTTCGAAGGTTACCAAGACACACTTTATGTACACACAATGAGACAATTTTACAGAGAATGTGACATTTATGGTACCGTAGATTTCATATTTGGGAACGCCAAGGTTGTGTTCCAGAGCTGCAACCTATACCCTCGGCTTCCCATGAAAGGACAATTCAACGCTATAACCGCACAAGGCCGAACGGACCCTAACCAGGACACGGGAATCTCCATCCACAACTGTACCATTAGAGCCGCGGATGACCTGGTGGCGGCGGGAAGGGGCGCTGCGCCCACGTATTTGGGGAGGCCATGGAAGGAATATTCGAGAACGGTGTACATGCAAACAATGATGGATGGTGTGGTGGATAGTGCAGGGTGGCGTGCATGGGACAGAGATTTTGCGTTGACCACTCTCTATTATGCTGAGTTTAATAACACCGGGGTGGGGGCCACTACTGCTAATAGGGTGACGTGGCAGGGTTACCATGTGATTAACACAACGGATGCTGCTAACTTTACTGTTTCCAACTTCTTGCTTGGAGATAATTGGTTGCCCAAGACTGGAGTGGCTTACACCAATGCCTTTATTTAG 663 0.4932 MTFRNTAGPEKHQAVAVRNGADFSTFYSCSFEGYQDTLYVHTMRQFYRECDIYGTVDFIFGNAKVVFQSCNLYPRLPMKGQFNAITAQGRTDPNQDTGISIHNCTIRAADDLVAAGRGAAPTYLGRPWKEYSRTVYMQTMMDGVVDSAGWRAWDRDFALTTLYYAEFNNTGVGATTANRVTWQGYHVINTTDAANFTVSNFLLGDNWLPKTGVAYTNAFI 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00006 220 PANTHER PECTINESTERASE 1 209 - -
Stsc120835g00006 220 Pfam Pectinesterase 1 205 IPR000070 GO:0030599|GO:0042545
Stsc120835g00006 220 ProSitePatterns Pectinesterase signature 2. 52 61 IPR033131 -
Stsc120835g00006 220 SUPERFAMILY Pectin lyase-like 1 216 IPR011050 -
Stsc120835g00006 220 Gene3D - 1 219 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00006 Stsc-Chr120835 23051 23889 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00006 1 220 Carbohydrate Esterase AT4G02330 73.182 1.00e-122 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00006 K01051 - gmx:100790729 380.948