Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00005 ATGGACCCTTCTTACTGCAAAACAGTGCTTGCTAATCAGCACGGCAATATCTACGACTATTGCCGCGTTTCTGTTAGAAAGTCTTTATCACAATCTAGAAAGTTCTTGAATGCTGTCAACTCTTATCTTCAACAACGTGCCGACTCTCATTACTCTCAACCCACAATCCTTGCTCTCCAAGATTGCAAATTCCTCGCTGAACTCAACTTCGAATACTTGTCAAACACCCTTGACACGGTTGATAAAGCCGGTGATGTTCTTCCTTCCGGTGAAGCCGATGATTATCACACACTTCTCAGTGCTGTTTTGACAAACCAACAAACATGTCTTGGTGGATTGCTAACCACAGCTTCTGATCAGAGAGTCAAAGATGAGCTTTCCTCTTTGCTCTCAGAGGATACAAAGCTTAACAGTGTTTCTCTTGCTATGTTCGTTGATGCTTGGATTCCTCAGGATGAAACTATCTCGTGGGAAGAACAACCTCATGGCCATGGCAGAAAGCTACTAAGCTTGGATGGCATGGAAGACGTGCAGGTGAAAGATTTTGTGGTTGTTAGTAAGGATGGAAGTGGAAACTTCACCACTATCAACGAAGCTATAAAAGCTGCACCCAATAACTCTGTTTCTAGCGATGGCTATTTCGTCATCTTCATCAACGAAGGTGTGTATGAGGAGTATGTATCTATAGACAAGAAGAAGAAGTTCTTGATGCTGATTGGAGATGGAATCAATCGTACAGTTATCACTGGAGATCACAATGTTGTTGATGGTTTCACAACATTCAACTCAGCAACATTTGCTGTGGTGGCACAAGGATTTGTAGCTGTCAACATAACATTTCGCAACACTGCAGGACCAAGCAAGCACCAAGCAGTGGCAGTGAGAAATGGAGCAGATTTGTCCACCTTCTATGGCTGCAGCTTTGAAGGCTATCAAGACACATTGTACACACATTCCATGAGGCAATTCTACCGGAAATGTGATATTTATGGAACAGTTGACTTTATATTTGGAAATGCAGCAGTTGTTTTCCAAAACTGCAACTTATATCCCCGCCTTCCCATGACTGGACAATTCAATGCCATCACCGCACAAGGCAGAACTGATCCGAACCAGAACACTGGTATTTCCATTCAGAGCGCAACCATTAAAGCCACGGACGATTTGGCTCCGGTGGTTGGTAGTGTGTTAACATACCTTGGGAGGCCGTGGAAGCAGTATTCAAGGACAGTTTACATTCAATCTTTTATGGATAGTTTGATAGCTCCAGTTGGATGGAGTAAATGGGATGGAGATTTTGCACTGAGCACATTGTACTATGGTGAGTACAATAACATGGGGCCTGGTTCAAGCACTGGTGCTAGAGTGAATTGGCCTGGCTATCATATTATGAATGATGTTGATGCAGCTAACTTTACTGTCTCCAAATTCTTGGATGGGGATGCTTGGCTGCCTCCAACTAAGGTTCCATTTCAGGCATCATTATAA 1488 0.4328 MDPSYCKTVLANQHGNIYDYCRVSVRKSLSQSRKFLNAVNSYLQQRADSHYSQPTILALQDCKFLAELNFEYLSNTLDTVDKAGDVLPSGEADDYHTLLSAVLTNQQTCLGGLLTTASDQRVKDELSSLLSEDTKLNSVSLAMFVDAWIPQDETISWEEQPHGHGRKLLSLDGMEDVQVKDFVVVSKDGSGNFTTINEAIKAAPNNSVSSDGYFVIFINEGVYEEYVSIDKKKKFLMLIGDGINRTVITGDHNVVDGFTTFNSATFAVVAQGFVAVNITFRNTAGPSKHQAVAVRNGADLSTFYGCSFEGYQDTLYTHSMRQFYRKCDIYGTVDFIFGNAAVVFQNCNLYPRLPMTGQFNAITAQGRTDPNQNTGISIQSATIKATDDLAPVVGSVLTYLGRPWKQYSRTVYIQSFMDSLIAPVGWSKWDGDFALSTLYYGEYNNMGPGSSTGARVNWPGYHIMNDVDAANFTVSKFLDGDAWLPPTKVPFQASL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00005 495 FunFam Pectinesterase 1 146 - -
Stsc120835g00005 495 Pfam Plant invertase/pectin methylesterase inhibitor 2 143 IPR006501 GO:0004857
Stsc120835g00005 495 SMART PMEI_2 1 143 IPR006501 GO:0004857
Stsc120835g00005 495 Gene3D - 176 495 IPR012334 -
Stsc120835g00005 495 Pfam Pectinesterase 183 481 IPR000070 GO:0030599|GO:0042545
Stsc120835g00005 495 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 144 IPR035513 -
Stsc120835g00005 495 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 145 IPR035513 -
Stsc120835g00005 495 ProSitePatterns Pectinesterase signature 2. 329 338 IPR033131 -
Stsc120835g00005 495 PANTHER PECTINESTERASE 6 487 - -
Stsc120835g00005 495 FunFam Pectinesterase 176 495 - -
Stsc120835g00005 495 SUPERFAMILY Pectin lyase-like 180 492 IPR011050 -
Stsc120835g00005 495 CDD PMEI-like_3 1 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00005 Stsc-Chr120835 17284 18862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00005 2 495 Carbohydrate Esterase AT1G02810 54.963 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00005 K01051 - gmx:100792847 763.451