Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120835g00004 ATGTATAACCTGAGCAGAGCAAGAGGAAGAGCAGTAGCACTATTGCTGCTGTCTCTCTTCCTTCTCAACTTTACATCAACAGCAGCAGCATCTCATGAAATAGCACACTCAGCATGCGAGGGAACACTCTACCCAGACCTCTGCGTCTCAACCCTTGCCACATTCCCCGATCTCGCATCCAAATCCCTCCCTCAAACCATATGCGCCCTCCTCAACCACACCGTCGGCGAGGTCACTTCATCTTCCTACAACTGCACCGGACTCAGAAAGGGTCTCCCCAACCTCACCACCCTCGAGAAGCGTGCCCTCGACGACTGCATCGCCTTGTTCGAAGACACCCGCACGGAGCTGGGCACCACCATCTCCGATCTCAACCAGACCACAATACCCAGCAGGCGCTACCAGGACTCGCAGACTCTTCTGAGTGGAGCCATGACCAACTTGTACACGTGCCTCGATGGCTTCGCTTACTGCAAGAGGAGTCACGTGAGGGAAAGGTACCTGCAGGACAAGTTGTTTCAGATTTCTCGTCATGTTAGTAACTCCCTTGCCATGCTGAAGAAGGTTCCAGGAGTAAAGAAGCCTTCCGAATCGGAGGCCTTCCCGGAATACGGGAAGATGAAGGGACATTTTCCAACGTGGGTCAGTAACAAAGAGCGGAAGCTGCTTCAAGCTTCTACGAATGAGAATAAGTTTAATCTTGTTGTGGCGCAAGATGGCAGTGGAAATTTCAAGACTATAGGGGAAGCACTGGCTGCTGCTCCCAACTCAAGCACAACCAGGTTTGTGATACACATAAAAGCTGGAGCGTATTTTGAGAACGTGGAGGTGATTAAGAAGAAGACGAATTTGATGTTGGTGGGTGATGGAATTGGAAAAACTGTGGTGAAGGCCAGTCGGAATGTCGTCGACGGCTGGACCACTTTCCAGTCCGCTACTTTTGCTGTAGTAGCAGACGGATTCATAGCGAAAGGGATAACATTTGAGAACTCAGCTGGGCCCAGCAAGCACCAGGCCGTGGCCGTAAGAAACGGTGCAGATCTCTCTGTATTCTACCAATGCAGTTTCGTCGCATACCAAGACACCCTCTACGTCCATTCCCTACGCCAATTCTACCGCGAATGCGACGTATACGGCACCGTAGACTTCATCTTCGGCAACGCCGCCGTGGTCTTCCAGAACTGCAACCTGTACGCACGGAAGCCCGATCCAAACCAAAAGAACCTGTTCACTGCACAGGGCAGAGAAGACCCTAACCAGAACACCGGAATATCAATCTTGAACTGCAAGGTTACTGCCGCATCGGATCTGATCCCCGTGAAGTCTACCTTCAAGACTTACCTTGGTAGGCCTTGGAAGATGTATTCGAGAACGGTTTTCTTGAAATCGTTCATTGACGATTTGGTTGACCCGGCGGGTTGGTTGGAGTGGAATGGGACCTTTGCTTTGGACACATTGTATTATGGTGAGTACCAAAATAGGGGTCCTGGTTCCAACACTAGTGCTAGGGTTAAGTGGCCTGGTTATAGAGTCATAACTAACTCCACTGAGGCAAGTCAATTCACGGTTAAGCAGTTTATAATGGGCGATGTCTGGCTTAACTCCACTGGAGTTCCCTTCTTCTCCGGTTTGAGTTGA 1638 0.5049 MYNLSRARGRAVALLLLSLFLLNFTSTAAASHEIAHSACEGTLYPDLCVSTLATFPDLASKSLPQTICALLNHTVGEVTSSSYNCTGLRKGLPNLTTLEKRALDDCIALFEDTRTELGTTISDLNQTTIPSRRYQDSQTLLSGAMTNLYTCLDGFAYCKRSHVRERYLQDKLFQISRHVSNSLAMLKKVPGVKKPSESEAFPEYGKMKGHFPTWVSNKERKLLQASTNENKFNLVVAQDGSGNFKTIGEALAAAPNSSTTRFVIHIKAGAYFENVEVIKKKTNLMLVGDGIGKTVVKASRNVVDGWTTFQSATFAVVADGFIAKGITFENSAGPSKHQAVAVRNGADLSVFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYARKPDPNQKNLFTAQGREDPNQNTGISILNCKVTAASDLIPVKSTFKTYLGRPWKMYSRTVFLKSFIDDLVDPAGWLEWNGTFALDTLYYGEYQNRGPGSNTSARVKWPGYRVITNSTEASQFTVKQFIMGDVWLNSTGVPFFSGLS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120835g00004 545 NCBIfam pectinesterase inhibitor domain 13 187 IPR006501 GO:0004857
Stsc120835g00004 545 Gene3D - 228 544 IPR012334 -
Stsc120835g00004 545 FunFam Pectinesterase 227 544 - -
Stsc120835g00004 545 SMART PMEI_2 30 185 IPR006501 GO:0004857
Stsc120835g00004 545 ProSitePatterns Pectinesterase signature 2. 377 386 IPR033131 -
Stsc120835g00004 545 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 191 IPR035513 -
Stsc120835g00004 545 PANTHER PECTINESTERASE 22 534 - -
Stsc120835g00004 545 Pfam Pectinesterase 233 530 IPR000070 GO:0030599|GO:0042545
Stsc120835g00004 545 Pfam Plant invertase/pectin methylesterase inhibitor 36 185 IPR006501 GO:0004857
Stsc120835g00004 545 CDD PMEI-like_3 37 191 - -
Stsc120835g00004 545 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 189 IPR035513 -
Stsc120835g00004 545 SUPERFAMILY Pectin lyase-like 232 543 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120835g00004 Stsc-Chr120835 8749 12238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120835g00004 59 540 Carbohydrate Esterase AT4G02320 54.767 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120835g00004 K01051 - gmx:100802881 823.157