Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120834g00052 ATGGCTATTCATGCAAAGTCTGATGAAGGAATTCTTGAGAATGTTTGGGCTAAAATTATAAGCAGTGATGACAGAGCATGTCATGCATCATCATCAGAATCTTCCAATAATGGAAAAGACGGGTCAATGAAAATTCTAGAAAGGCTTCCAAGTTTAGGAAGATGGATATCTATGGGAGCAGAATTTTGGGAAGAAATCTTAGATGATGTTCTTCTACAAGCTACAACCAATAATAATAATAATAATAATAATAATAATAATGCAGATAGTACTATTGTGGCCATTGATGGAGGTGATGATGCAAAATCCAAGAAGAAGAAGATAGAAGTAATTAAGGCAAAGCACTACAGGGGAGTAAGGAGAAGGCCATGGGGTAAGTATGCTGCAGAGATTAGAGATTCATCCAAGAAAGGTGCAAGATTGTGGCTTGGGACATTCGACACGGCTGAAGAAGCGGCTTTGGCTTATGACAAAGCGGCTTTCAGAATTCGAGGTCCAAAGGCACGTCTCAATTTCCCACACCACAATCATAATAATGAAGATACAGAAAATGGTTCGCGCCGCCGTGGAAGGGAAGAGTTTGAAGATGTGATGGTGATGAATAATGAAGAGCAGCCTGCAACCAAGAAAATGGCAAGCTTGGAAAGGATGATGGATAATGAGCTTGAAGTTCTTGTGTTACAAGGATTCGGAAATGTTTATTTGGAAGACTTAATTTCTTCTCTATAA 729 0.3909 MAIHAKSDEGILENVWAKIISSDDRACHASSSESSNNGKDGSMKILERLPSLGRWISMGAEFWEEILDDVLLQATTNNNNNNNNNNNADSTIVAIDGGDDAKSKKKKIEVIKAKHYRGVRRRPWGKYAAEIRDSSKKGARLWLGTFDTAEEAALAYDKAAFRIRGPKARLNFPHHNHNNEDTENGSRRRGREEFEDVMVMNNEEQPATKKMASLERMMDNELEVLVLQGFGNVYLEDLISSL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120834g00052 242 MobiDBLite consensus disorder prediction 170 189 - -
Stsc120834g00052 242 PANTHER DNA-BINDING DOMAIN 57 201 IPR044808 GO:0003700|GO:0009873
Stsc120834g00052 242 FunFam Ethylene-responsive transcription factor 2 114 174 - -
Stsc120834g00052 242 SMART rav1_2 115 179 IPR001471 GO:0003700|GO:0006355
Stsc120834g00052 242 Pfam AP2 domain 115 165 IPR001471 GO:0003700|GO:0006355
Stsc120834g00052 242 ProSiteProfiles AP2/ERF domain profile. 115 173 IPR001471 GO:0003700|GO:0006355
Stsc120834g00052 242 CDD AP2 114 175 IPR001471 GO:0003700|GO:0006355
Stsc120834g00052 242 MobiDBLite consensus disorder prediction 173 189 - -
Stsc120834g00052 242 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Stsc120834g00052 242 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Stsc120834g00052 242 Gene3D AP2/ERF domain 114 175 IPR036955 GO:0003700|GO:0006355
Stsc120834g00052 242 SUPERFAMILY DNA-binding domain 115 174 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120834g00052 Stsc-Chr120834 354585 355313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120834g00052 105 180 AP2-EREBP Transcription Factor Family AT5G47220 67.500 1.85e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc120834g00052 AP2 1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120834g00052 - - gmx:100820226 224.557