Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120834g00022 ATGGATCTCTCTAAGAAGCGTAAAACAGACGAGAACGGCGACACTGATTCTTCTCCGCCCCAACAACCTCCCCCTTCCGCCTCCCCAACCACCTCCCTCTCCGCAGACGACATCCGCAAGATCCTCCAACCCTTCACGCAGGAGCAGCTCGTCGACCTCCTCCAATCAGCCTCCCTCCGCCACCCTGATGTCTTCGACTCCGTCCGCTCCGTCGCCGACCGCGACTCCACACTCCGAAAGCTATTCGTCCGCGGCCTCTCCGCCGACACCACCACGGACACTATCCGCGCCATCTTCTCCGCATACGGCGACCTTGACGAAGCCATCGTCATCTTTGACAAGAACACCGGAAAATCCAAGGGCTACGGCTTCGTCACCTTCTCCCACGTCGACGGCGCCGTCCTCGCCCTCAAGGATCCCAGCAAGAAAATCGACGGCCGCATGACCGTCACACAGCTTGCCGCCTCCGGTGGACCTGGCGCCGCCTCAGCTACCGACGTAGCCGCACGGAAGGTTTTTGTAGGTAACGTTCCATTCGAAATCCCATCGGAGAGGCTCTTGAGCCACTTTCTTGCATACGGTGAGGTAGAAGAAGGTCCTCTAGGTTTTGATAAGAGTAGTGGTAAAACAAGAGGGTTTGCGTTTTTCGTGTACAAGACTGAAGAAGGGGCTAGGGCTTGTTTGGCAGAGCCAACGAAGACAATTGATGGCCACCAAGTGTTCTGCAAGTTGGCCGTGGATAACAAGAAATCAAAGCCGCAGAACCCTGCTTCTGGATTTGGAGGGGATGGTATGCATGCTCAGCAGCAGCAACAACAACAGCAACCTCCTTACAATGCTCCTATGTTGATTTCTCAGTACGGTGGATATGCTGGCGGTGGTGTGCATGGTAACGGTTATGGGATGCAGCCTTCGGTGCCTTCTTATGGAAACCCTGTTCCAGCTGCTGGTGGCGGTGTTGGTGGGTACGGTACTACAGGTGGTGGTTATGGGAATCCGCAGTATGGCGGGCCGGTTTCCGGTGATTATGGTGCAAGGTTGCCTCCTACTTCTGGTGGGTTTATGGATGGCTCTCATTATGGTGCTTTACATTCGTCTGCAATTCCATCACAGCAGCAGCCTGTGCCAATGCCAAGATNNNNNNNNNNGCCCCTCCTGGAGGAATGTACCAAGGCGTGCCGCCCTATTATTGAGTGA 1197 0.5489 MDLSKKRKTDENGDTDSSPPQQPPPSASPTTSLSADDIRKILQPFTQEQLVDLLQSASLRHPDVFDSVRSVADRDSTLRKLFVRGLSADTTTDTIRAIFSAYGDLDEAIVIFDKNTGKSKGYGFVTFSHVDGAVLALKDPSKKIDGRMTVTQLAASGGPGAASATDVAARKVFVGNVPFEIPSERLLSHFLAYGEVEEGPLGFDKSSGKTRGFAFFVYKTEEGARACLAEPTKTIDGHQVFCKLAVDNKKSKPQNPASGFGGDGMHAQQQQQQQQPPYNAPMLISQYGGYAGGGVHGNGYGMQPSVPSYGNPVPAAGGGVGGYGTTGGGYGNPQYGGPVSGDYGARLPPTSGGFMDGSHYGALHSSAIPSQQQPVPMPRXXXXPLLEECTKACRPIIE 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120834g00022 398 SUPERFAMILY RNA-binding domain, RBD 68 159 IPR035979 GO:0003676
Stsc120834g00022 398 SMART rrm1_1 171 243 IPR000504 GO:0003723
Stsc120834g00022 398 SMART rrm1_1 80 152 IPR000504 GO:0003723
Stsc120834g00022 398 PANTHER GEO13361P1-RELATED 62 303 - -
Stsc120834g00022 398 FunFam UBP1-associated protein 2C isoform A 62 165 - -
Stsc120834g00022 398 Gene3D - 4 161 IPR012677 -
Stsc120834g00022 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 251 IPR000504 GO:0003723
Stsc120834g00022 398 SUPERFAMILY RNA-binding domain, RBD 166 266 IPR035979 GO:0003676
Stsc120834g00022 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
Stsc120834g00022 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 239 IPR000504 GO:0003723
Stsc120834g00022 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 147 IPR000504 GO:0003723
Stsc120834g00022 398 MobiDBLite consensus disorder prediction 264 281 - -
Stsc120834g00022 398 MobiDBLite consensus disorder prediction 341 364 - -
Stsc120834g00022 398 Gene3D - 162 277 IPR012677 -
Stsc120834g00022 398 MobiDBLite consensus disorder prediction 247 283 - -
Stsc120834g00022 398 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120834g00022 Stsc-Chr120834 138062 141039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120834g00022 166 361 C2H2 Transcription Factor Family AT2G19380 29.048 7.87e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120834g00022 K12741 - gmx:100804230 426.787