Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120834g00021 ATGGTTTACACCTTTTATAATAACTATAACTATAACTCGAATTCTTCTTGGCATAACTATGGAACTTCCTATGGTGTTCTGGAAGCATCACATACATTGAATTTGGAGAGTAGTGAAAAGATAGAGCAGCAAGTGAATAATGGATCAGAAGAAGCTGCAAGGGTAGGAAAGAATAATAATAATAATGATGAGAACTCGGATGCAAAAGCCATAGCTGCTTTGAAGAATCACAGTGAAGCTGAGAGGAGGAGGAGGGAGAGAATCAATGGCCATCTTGCAACTTTGCGAGGTCTTGTTTCTTCCACAGACAAGATGGACAAAGCAACAATATTGGCTAAAGTAATTAGCCAAGTTAAGGAATTGAAGAAGAATGCAATGGAAGCAAGTAAAGGTCTTCTAATCCCAACAGATTTTGATGAAGTTGAAGTTGAACCATACGAAGATGGAGGAGAAGGAGATCATGGATCCATGTCATACAAGGCATCCATCTGCTGCGATTACGGGCCGGAGATTCTCTCCGACCTGCGACACACTATTGATGCCCTTGAATTGCAACTGGTGAGGGCAGAGATATCAACCTTAGACGGCAGAATGAAAAATGTGTTTGTGTATAGATGTTGCAAAGGGAAAGGCCACAATAATAACACTGATGCATGTCAAGCTCTTGCAAGAAATCTTCAAAAGGCACTGAGTTGTGTAATAGAAAAGGCTTCTAATTCACTTGAGTACTCACTGAGAGCTTCACTTCCAAGTAAGAGGAGAAGAATCTGCTTGCTTGAGGATTGA 786 0.4059 MVYTFYNNYNYNSNSSWHNYGTSYGVLEASHTLNLESSEKIEQQVNNGSEEAARVGKNNNNNDENSDAKAIAALKNHSEAERRRRERINGHLATLRGLVSSTDKMDKATILAKVISQVKELKKNAMEASKGLLIPTDFDEVEVEPYEDGGEGDHGSMSYKASICCDYGPEILSDLRHTIDALELQLVRAEISTLDGRMKNVFVYRCCKGKGHNNNTDACQALARNLQKALSCVIEKASNSLEYSLRASLPSKRRRICLLED 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120834g00021 261 Pfam Helix-loop-helix DNA-binding domain 76 121 IPR011598 GO:0046983
Stsc120834g00021 261 Gene3D - 68 130 IPR036638 GO:0046983
Stsc120834g00021 261 Coils Coil 172 192 - -
Stsc120834g00021 261 SMART finulus 78 127 IPR011598 GO:0046983
Stsc120834g00021 261 MobiDBLite consensus disorder prediction 45 65 - -
Stsc120834g00021 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 123 IPR036638 GO:0046983
Stsc120834g00021 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Stsc120834g00021 261 PANTHER TRANSCRIPTION FACTOR BHLH30 39 257 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120834g00021 Stsc-Chr120834 133804 136967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120834g00021 7 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 35.556 8.65e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc120834g00021 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120834g00021 - - gmx:100818879 272.707