Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120834g00015 ATGACCAATGGCTTCAACCACAAGTTAGGTGAAGGAGGCTATGGCTCTGTCTACAAAGGAAAACTCCAAAGCAAGCGCGACGTTGCTGTGAAGTTGTTGTCCAAATTCTCTAAGCCAAATCAACAACAGTTCATCAATGAAGTTGCCGCCACTGGAAAGATTCGTCATGTCAATGCAGTTCAGTTAATCGGATTTTGTGCCGAAAGATCTAAGCTCGCTCTGGTTTATGAGTACATGCCTAATGGTTCTCTTGACAAGTACATACTTAAGCAAGAACAAGGGAATGTTTCAATAAGCTATGAGAAAATTCACGACATTGCTATTGGCGTGGCGCGAGGAATCGAATATTTACATGAAGGTTGTGATATGCAGATCTTGCACTTTGATATCAAGCCTCACAACATTCTTCTGGACGAAAATTTTAATCCGAAGATATCAGATTTCGGATTGGCAAAGTTATATCCAACGGATAATATCAACGTGTCTCTAACGGCCGCTAGAGGAACAATGGGATACATGGCACCTGAATTGTTCTACAAAAACATTGGAGGAATCTCATACAAAGCAGATGTTTATAGCTTTGGGATGTTGTTGATGGAAATGGCAGGTCGAAGAAAGAACTTGAATACTATAGAGTATTCATGA 645 0.4047 MTNGFNHKLGEGGYGSVYKGKLQSKRDVAVKLLSKFSKPNQQQFINEVAATGKIRHVNAVQLIGFCAERSKLALVYEYMPNGSLDKYILKQEQGNVSISYEKIHDIAIGVARGIEYLHEGCDMQILHFDIKPHNILLDENFNPKISDFGLAKLYPTDNINVSLTAARGTMGYMAPELFYKNIGGISYKADVYSFGMLLMEMAGRRKNLNTIEYS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120834g00015 214 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 208 IPR045874 GO:0004672
Stsc120834g00015 214 Gene3D Transferase(Phosphotransferase) domain 1 80 213 - -
Stsc120834g00015 214 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Stsc120834g00015 214 SMART serkin_6 3 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120834g00015 214 SUPERFAMILY Protein kinase-like (PK-like) 7 207 IPR011009 -
Stsc120834g00015 214 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Stsc120834g00015 214 FunFam Os07g0541700 protein 79 169 - -
Stsc120834g00015 214 Gene3D Phosphorylase Kinase; domain 1 9 79 - -
Stsc120834g00015 214 Pfam Protein kinase domain 6 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120834g00015 214 ProSiteProfiles Protein kinase domain profile. 3 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120834g00015 Stsc-Chr120834 112769 113824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120834g00015 1 214 Receptor kinase-like Gene Family AT5G38280 55.814 2.58e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc120834g00015 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120834g00015 - - vvi:100243578 333.569