Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120834g00013 ATGTTCCACACTCAAGTCACCTTCCTCTTCTGCTTCTTATCACTCTTCTTCTCTTCTTCCTTATCCCGCCACCTCCTCCACCACCCACTCTTTACGCCTCCTTCACTCCCCATTTCCCCAACACAACCACCATCTCACTCTCCACAACCACAACCACAACCACAACACCACCAACCCAAGCTTCCATTCTCTTCCATTTCATCACCTTCTTCACCATCTTCTTCTTCCCAACCAAACAACCCTTTCTTCTTCCCCACCTACCCTCCATCTCCACCTCCTCCATCACCCTCCGTCGTCGCCACATTCCCGGCCAACATCTCCTCCCTCCTCCTCCCCCACCCCACTGCCAGACACCACCGTCCCGCTCTCTCACTTGCTCTCTCCCTCTCCCTTCTCTCCCTCGTCCTCCTCTCCGCCGTTGCGGCCTTCGCTCTCCACCGCCGCTCCCGCACCACTTCCTCCTTCCACGCCGACGACCACGAAGATGACGACAAGGCCTCCAGACAAGACAGCCTCCGTCTGTTCCCCCGCAACGCTGCCACCTCCGACGGCACCCACCCCAAGCCCCGCGGCGGCACCGGCGCCACCTCGAGCCCGCGCACAGATTACCTCTACCTCGGCACGGTGGCGAGTTCAGAGCCTCCGGATTCGAGCTCCAGCAGCACCACCGGAACCTTAATAGCGCCGCCGTACCGGAAACTGGGTGACTCTCCGGAGCTGAAACCACTGCCTCCTCTTCCTCGCCATAATCTCCGGCCATGGCTGAGTAAAGAAGAAGAAGACAAGAAAGAAAAGCATAAGGAGTATGAAGATGAAGAAGAAGATGAAGAGTTCTTTTCTCCGAGAGGCTCTTCCGGTAACAAACAACTGAGTCCTCCTTACCCTGTTCCGGTTCTTGGAATCGGAGATTTGAGTCCTCGTTCATTGGAGAAACTCGGATGCAAAAGCTTCACTTCAAGAATTCCATCTCATTCTCATTCTTGTTCTCCTCTCAGCCCCGAAAGCACCAAATCGCTGCCACCACCTCATCAGAACCCAGTTTCTGCGTCGCACTCTCCCTCTTCTTTCTGTTCTTCAACTTCTTCACCTCCTAAGCCTAGAGAGGAGTTTATATCCAGTTGGGATGCTCCGGCTCCTCCTCCTCCACCACCGCCTCCGCCGCCGCGTTTCTGGGAGACTCCGGTGATGAATACATTGGCGGCGAATGAGAGTGAGGAAACTCCGAAGCCAAAGTTGAAAGCTTTGCATTGGGATAAAGTGAAAGCTAGTTCTGATAGGGCGACGGTTTGGGATCGCTTGAGACCAAGTTCTTTCCAATTGAACGAGGACATGATTGAGACGCTATTCATGGTTAATAACTCAAAGGAAAGTAGTGGGGATAATAATAATGGACGCCGCGGTCAAGTGGTTCATTCTTCGCCAGTGCCGCCGGAGAATAGGGTGCTAGACCCCAAGAAGTCTCAGAACATTGCTATTTTGCTTAGGGCGCTCAATGTAACTATTGATGAAGTTTGTGAAGCTCTCAGGGAAGGCAACTGTGATACCCTGGGAACAGAACTTCTAGAGAGTTTGTTGAAGATGGCTCCAACCAAAGAAGAAGAAACTAAGCTGAGGGAGTACCAAGACGAATCGCCCTTCAAGCTTGGGCCTGCTGAGAAATTTCTTAAGATCATGCTTGATATACCTTTTGCATTTAAGAGAGTGGAAGCTATGCTCTACATTGCTAATTTTGATTCTGAATTAGAATACCTTAAAAAGTCCTTTGAGACTCTGGAGGTGGCTTGTGAAGAATTGAGAAACAGCAGAATGTTTTTGAAGTTACTTGAAGCTGTTCTCAGAACTGGAAACCGAATGAATGTCGGCACGAACCGTGGCGATGCGCATGCATTCAAGCTGGACACTCTTCTAAAGCTAGTTGATATTAAAGGAACTGATGGGAAGACCACTCTTTTGCATTTTGTTGTACAGGAAATTATCAGAACTGAGGGATCTCATATTTCCGATTCTAACAATCAACAAGCCTCCAAGAACAACCAGGAATATACTCTTCAAGATGAGGTTGAATTCCGGAAGCTTGGACTGCAAGTTGTTTCGGGCTTGAGTGGGGAGCTCACTAATGTGAAAAAAACAGCTACCATGGACTCAGACATGCTTAGCAGCGATGTTGCTAAACTTGCTAGGGGAATCGAGAAAGTTGTGGAAGTTGTCAGACTGAATGAAGCGTCACCTTTGAAAGACACTAGCCAAAAGTTTTCCGAGGCAATGAAATGTTTCTTGGAGAAAGGAGGAGAAGAAATTTTAAGAATCCAGAACCAAGAGAAAAAGGCTCTCTCTTCAGTAAAGGAGATAACTGAGTATTTCCATNNNNNNNNNNTGAAGAAGCTCATCCTTTCAGGATTTTTATGGTAG 2409 0.4898 MFHTQVTFLFCFLSLFFSSSLSRHLLHHPLFTPPSLPISPTQPPSHSPQPQPQPQHHQPKLPFSSISSPSSPSSSSQPNNPFFFPTYPPSPPPPSPSVVATFPANISSLLLPHPTARHHRPALSLALSLSLLSLVLLSAVAAFALHRRSRTTSSFHADDHEDDDKASRQDSLRLFPRNAATSDGTHPKPRGGTGATSSPRTDYLYLGTVASSEPPDSSSSSTTGTLIAPPYRKLGDSPELKPLPPLPRHNLRPWLSKEEEDKKEKHKEYEDEEEDEEFFSPRGSSGNKQLSPPYPVPVLGIGDLSPRSLEKLGCKSFTSRIPSHSHSCSPLSPESTKSLPPPHQNPVSASHSPSSFCSSTSSPPKPREEFISSWDAPAPPPPPPPPPPRFWETPVMNTLAANESEETPKPKLKALHWDKVKASSDRATVWDRLRPSSFQLNEDMIETLFMVNNSKESSGDNNNGRRGQVVHSSPVPPENRVLDPKKSQNIAILLRALNVTIDEVCEALREGNCDTLGTELLESLLKMAPTKEEETKLREYQDESPFKLGPAEKFLKIMLDIPFAFKRVEAMLYIANFDSELEYLKKSFETLEVACEELRNSRMFLKLLEAVLRTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRTEGSHISDSNNQQASKNNQEYTLQDEVEFRKLGLQVVSGLSGELTNVKKTATMDSDMLSSDVAKLARGIEKVVEVVRLNEASPLKDTSQKFSEAMKCFLEKGGEEILRIQNQEKKALSSVKEITEYFHXXXXKKLILSGFLW 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120834g00013 802 ProSiteProfiles Formin homology-2 (FH2) domain profile. 402 802 IPR015425 -
Stsc120834g00013 802 PANTHER FORMIN-RELATED 10 790 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Stsc120834g00013 802 MobiDBLite consensus disorder prediction 452 469 - -
Stsc120834g00013 802 Pfam Formin Homology 2 Domain 404 789 IPR015425 -
Stsc120834g00013 802 SMART it6_source 402 798 IPR015425 -
Stsc120834g00013 802 MobiDBLite consensus disorder prediction 154 171 - -
Stsc120834g00013 802 MobiDBLite consensus disorder prediction 154 408 - -
Stsc120834g00013 802 MobiDBLite consensus disorder prediction 58 81 - -
Stsc120834g00013 802 MobiDBLite consensus disorder prediction 341 367 - -
Stsc120834g00013 802 SUPERFAMILY Formin homology 2 domain (FH2 domain) 379 794 - -
Stsc120834g00013 802 Gene3D Formin, FH2 domain 397 799 IPR042201 -
Stsc120834g00013 802 MobiDBLite consensus disorder prediction 191 227 - -
Stsc120834g00013 802 MobiDBLite consensus disorder prediction 375 392 - -
Stsc120834g00013 802 MobiDBLite consensus disorder prediction 36 89 - -
Stsc120834g00013 802 MobiDBLite consensus disorder prediction 36 57 - -
Stsc120834g00013 802 Coils Coil 255 276 - -
Stsc120834g00013 802 MobiDBLite consensus disorder prediction 252 269 - -
Stsc120834g00013 802 MobiDBLite consensus disorder prediction 318 334 - -
Stsc120834g00013 802 MobiDBLite consensus disorder prediction 452 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120834g00013 Stsc-Chr120834 102271 105738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120834g00013 101 788 FH2 protein (formin) Gene Family AT2G43800 47.106 2.37e-177 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120834g00013 - - gmx:100786203 874.004