Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120834g00008 ATGACTGAATATGTTGTTACAAGATGGTACCGTGCACCAGAGCTTCTGTTAAACTCTTCTGATTATACGGCAGCAATTGATGTATGGTCTGTTGGTTGTATCTTCATGGAACTGATGGATCGGAAACCTTTGTTCCCTGGCAGAGATCATGTGCATCAATTGCGTCTACTTATGGAGCTTATTGGAACCCCATCAGAAGCTGATTTGGGATTTCTGAATGAAAATGCTAAGAGATACATTAGGCAACTACCTCTTTACCGACGCCAATCTTTCCAAGAAAAGTTCCCTCAGGTCCATCCTGCAGCCATTGATCTTGTTGAAAAGATGTTGACTTTTGATCCTAGACAAAGGATTACTGTGGAAGATGCGCTGGCGCACCCGTACCTGACATCGCTGCATGACATAAGTGATGAACCGGTGTGCATGACCCCCTTCAACTTTGATTTTGAACAGCATGCTTTGTCTGAGGAGCAGATGAAAGAACTGATATACAGAGAGTCTCTAGCATTTAACCCTGAATATCAGTAG 528 0.4318 MTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEADLGFLNENAKRYIRQLPLYRRQSFQEKFPQVHPAAIDLVEKMLTFDPRQRITVEDALAHPYLTSLHDISDEPVCMTPFNFDFEQHALSEEQMKELIYRESLAFNPEYQ 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120834g00008 175 Gene3D Phosphorylase Kinase; domain 1 157 166 - -
Stsc120834g00008 175 SMART serkin_6 1 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120834g00008 175 SUPERFAMILY Protein kinase-like (PK-like) 1 137 IPR011009 -
Stsc120834g00008 175 Pfam Protein kinase domain 1 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120834g00008 175 Gene3D Transferase(Phosphotransferase) domain 1 6 156 - -
Stsc120834g00008 175 ProSiteProfiles Protein kinase domain profile. 1 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120834g00008 175 FunFam Mitogen-activated protein kinase 1 147 - -
Stsc120834g00008 175 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120834g00008 Stsc-Chr120834 56292 57723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120834g00008 1 175 MAP Kinase Gene Family AT2G43790 89.143 5.70e-107 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Stsc120834g00008 Pkinase 8.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120834g00008 K14512 - gmx:547616 353.214