Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00088 ATGGTGGTCGAAGATACCCAGAAATCAAGCATCACCGACGACCAAATCGCCGCAAACCCTAACAACGAAAACGAAGACCTTGAAGAGGGAGAGATCCTCGACGACGAAGATTCCTCCGCCACCTCCAGGCCACCCTCCTCATCCGGCGCCGGCGCCCTCGCCCGCAACCCCCACCCTCTTGAGAACTCTTGGACCTTCTGGTTCGATAACCCCTCCGCTAAGTCCAAGCAAGCAGCTTGGGGCAGCTCCATCAGACCCATTTACACCTTCGCCACCGTTGAAGAATTCTGGAGCATTTACAATAACATACATCACCCTAGCAAGTTGGCTGTTGGAGCTGACTTTCACTGTTTCAAGCACAAGATTGAGCCTAAATGGGAGGACCCTATCTGCGCTAATGGGGGAAAATGGACTATGACATTTCCGAGGGGGAAATCTGATACCAGTTGGTTATACACGTTGTTGGCAATGATTGGAGAACAATTTGATCATGGTGATGAGATTTGTGGAGCTGTCGTGAATGTCAGGAATAGGCAGGAGAAAATAGCTCTTTGGACTAAGAATGCTGCAAATGAAGCTGCTCAGGTGAGCATTGGAAAACAGTGGAAGGAGTTTCTTGATTATAATGATACCATCGGCTTTATATTCCATGAGGATGCAAAGAAGCATGACAGAGCTGCGAAAAACAAATACGTGATATGA 702 0.4829 MVVEDTQKSSITDDQIAANPNNENEDLEEGEILDDEDSSATSRPPSSSGAGALARNPHPLENSWTFWFDNPSAKSKQAAWGSSIRPIYTFATVEEFWSIYNNIHHPSKLAVGADFHCFKHKIEPKWEDPICANGGKWTMTFPRGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRNRQEKIALWTKNAANEAAQVSIGKQWKEFLDYNDTIGFIFHEDAKKHDRAAKNKYVI 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00088 233 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 21 222 IPR001040 GO:0003723|GO:0003743|GO:0006413
Stsc120833g00088 233 Pfam Eukaryotic initiation factor 4E 59 210 IPR001040 GO:0003723|GO:0003743|GO:0006413
Stsc120833g00088 233 MobiDBLite consensus disorder prediction 1 22 - -
Stsc120833g00088 233 FunFam Eukaryotic translation initiation factor 4E 50 233 - -
Stsc120833g00088 233 Gene3D RNA Cap, Translation Initiation Factor Eif4e 50 233 IPR023398 -
Stsc120833g00088 233 ProSitePatterns Eukaryotic initiation factor 4E signature. 114 137 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Stsc120833g00088 233 MobiDBLite consensus disorder prediction 1 57 - -
Stsc120833g00088 233 SUPERFAMILY eIF4e-like 55 228 IPR023398 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00088 Stsc-Chr120833 386091 387949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00088 1 232 Eukaryotic Initiation Factors Gene Family AT4G18040 65.401 4.45e-113 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00088 K03259 - gmx:100793288 400.208