Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00076 ATGGCTTTTCCAGGAGCAGCAAATGAATCCATGTCAGGAGCAAGCTCACCACAGAGGAAGATGGGAAGGGGTAAGATTGAGATCAAGAGGATTGAGAACACCACAAATCGGCAAGTTACCTTTTGCAAGAGAAGAAATGGCCTTCTCAAGAAAGCATATGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCTCTTATTGTTTTCTCCAGCCGTGGCCGTCTCTATGAATATGCTAACAACAGTGTCAAAGCAACTATTGATAGGTATAAGAAAGCATGTTCAGATTCATCTGGTGCTGGATCTGCTTCTGAGATTAATGCTCAGTATTACCAGCAAGAAGCAGACAAACTGCGTACCCAAATTAGTAACCTGCAGAATAACAATAGGCAAATTCTGGGTGAGTCATTGAGTAGTATGAATGTGAAGGACCTCAAAAACCTGGAGGGTAAATTAGAGAAAGGAATAAGCAAGATTCGTTCCAAAAAGAATGAGCTGCTGTTTGCTGAAATTGAGTACATGCAAAAGAGGGAGATAGACTTGCACAACAACAATCAGCTTCTTCGAGCTAAGATAGCAGAAAGTGAGAGGAACCACCATAACATGGGCGTGTTGCCAACAACTGGAACCACAAACTATGATTCTTTGCAGCCTCATCAGCAGCAGCAGCAGGAACAATTTGACTCTCGTGGCTACTTTCAAGTCACTGGCTTACAACCCAATACTCAGTATGCACGCCAAGACCAAATGTCCCTTCAATTAGTTTGA 765 0.4261 MAFPGAANESMSGASSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKACSDSSGAGSASEINAQYYQQEADKLRTQISNLQNNNRQILGESLSSMNVKDLKNLEGKLEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHHNMGVLPTTGTTNYDSLQPHQQQQQEQFDSRGYFQVTGLQPNTQYARQDQMSLQLV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00076 254 CDD MADS_MEF2_like 22 91 IPR033896 GO:0000977|GO:0045944
Stsc120833g00076 254 SMART madsneu2 21 80 IPR002100 GO:0003677|GO:0046983
Stsc120833g00076 254 MobiDBLite consensus disorder prediction 1 27 - -
Stsc120833g00076 254 Pfam K-box region 106 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc120833g00076 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 220 - -
Stsc120833g00076 254 Gene3D - 33 99 IPR036879 GO:0003677|GO:0046983
Stsc120833g00076 254 ProSitePatterns MADS-box domain signature. 23 77 IPR002100 GO:0003677|GO:0046983
Stsc120833g00076 254 Coils Coil 144 164 - -
Stsc120833g00076 254 Coils Coil 107 134 - -
Stsc120833g00076 254 FunFam agamous-like MADS-box protein AGL11 33 116 - -
Stsc120833g00076 254 ProSiteProfiles K-box domain profile. 107 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc120833g00076 254 MobiDBLite consensus disorder prediction 197 226 - -
Stsc120833g00076 254 MobiDBLite consensus disorder prediction 200 226 - -
Stsc120833g00076 254 SUPERFAMILY SRF-like 22 93 IPR036879 GO:0003677|GO:0046983
Stsc120833g00076 254 PRINTS MADS domain signature 43 58 IPR002100 GO:0003677|GO:0046983
Stsc120833g00076 254 PRINTS MADS domain signature 58 79 IPR002100 GO:0003677|GO:0046983
Stsc120833g00076 254 PRINTS MADS domain signature 23 43 IPR002100 GO:0003677|GO:0046983
Stsc120833g00076 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 30 77 IPR002100 GO:0003677|GO:0046983
Stsc120833g00076 254 ProSiteProfiles MADS-box domain profile. 21 81 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00076 Stsc-Chr120833 321552 327441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00076 1 254 MADS-box Gene Family AT3G58780 63.813 1.00e-108 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc120833g00076 K-box 1.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00076 K09264 - gmx:732595 404.06