Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00075 ATGGAGACCAAAAACCCTTCGAGGTTCAAGCTGGGGAAGCAGTCATCGATGGCACCAGAACGCCACAGAGAAGATGGATCAGAGCTCCACAAAGATGGTGATGGCGACGAAGGTATCCATCCGGGTGTGAGGTTGATGTATTCGGCGAACGAGGGCGATCTTGATGGTATCCGTGAAGTGTTGGATTCAGGTGTGAGCGTCAATTTCAGGGACATTGATGACCGCACTGCACTTCACGTTGCTGCGTGTCAGGGATTAACCGATGTGGTTGCTTTGTTGCTCGAGAAAGGAGCTGAGGTCGACGCCAAAGATCGCTGGGGAAGCACGCCACTTGCAGATGCTATATTTTATAAAAACAATGACGTGATCAAACTATTGGAGAAGAATGGAGCAAAGCCTTTGATGGCCCCTATGCATGTTAATCATGCACGTGAAGTACCAGAATATGAAATCAATCCTAAAGAACTCGATTTCACCAATAGTGAGGAGATAACAAAGGGGACTTTCTGTAGTGCAATCTGGCGTGGGACACAGGTTGCAGTAAAAAAACTTGGGGAGGATGTAATTACTGATGAGGAGAAAGTGAAGGCCTTCAGAGATGAGCTTGATCTATTCCTCAAGATCCGCCATCCAAATGTAGTTCAGTTTCTGGGTGCTGTGACACAGAGTAGCCCGATGATGATCGTGACAGAATATCTTCCAAAGGGCGATCTCCGTGCATTCTTGGGAAGAAAAGGAGCTCTGAAACCATCAACAGCTGTGAAATTTGCACTTGATATTGCCAGGGGAGTGGGTTATTTACATGAGAATAAGCCATCACCAATCATTCACCGTGATCTTGAGCCTTCTAATATATTGCGGGATGATTCGGGACACCTAAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTGGCAGTTAAAGAAGACAGACCTCTAACTTGCCAAGATACTTCTTGCCGCTATGTGGCTCCTGAAGTTTTCAAACAAGAAGAATATGACACCAAAGTAGATGTATTCTCATTTGCGCTAATCCTGCAAGAGATGATTGAAGGTTGCCCACCATTTTCCGCAAAGAAAGATGAGGAGGTTCCTAAGGTATATGCTTCAAAAGAGCGCCCACCTTTTCGAGCTCCAGCCAAGCGCTATGCCCATGGGATTAGAGAATTGATTGAAGAGTGCTGGAATGAAAATCCAGCAAAGAGACCAACTTTTAGACAAATAATACCAAAGCTGGAATCCATCTACTACACTATTGGTCAAAAAGGACGTTGGAAGGTTAAACCATTGAAATGCTTCCAGAACCTGGAGGCCTTGTTGAAGAGGGATCGTTCTAGTAGCCGAGGCAGTTCATCGCGATCGAGGTCCAGCCGAATATGA 1377 0.4575 METKNPSRFKLGKQSSMAPERHREDGSELHKDGDGDEGIHPGVRLMYSANEGDLDGIREVLDSGVSVNFRDIDDRTALHVAACQGLTDVVALLLEKGAEVDAKDRWGSTPLADAIFYKNNDVIKLLEKNGAKPLMAPMHVNHAREVPEYEINPKELDFTNSEEITKGTFCSAIWRGTQVAVKKLGEDVITDEEKVKAFRDELDLFLKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLRAFLGRKGALKPSTAVKFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGVSKLLAVKEDRPLTCQDTSCRYVAPEVFKQEEYDTKVDVFSFALILQEMIEGCPPFSAKKDEEVPKVYASKERPPFRAPAKRYAHGIRELIEECWNENPAKRPTFRQIIPKLESIYYTIGQKGRWKVKPLKCFQNLEALLKRDRSSSRGSSSRSRSSRI 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00075 458 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515
Stsc120833g00075 458 Gene3D - 39 142 IPR036770 -
Stsc120833g00075 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 139 420 - -
Stsc120833g00075 458 FunFam serine/threonine-protein kinase STY46-like 151 234 - -
Stsc120833g00075 458 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Stsc120833g00075 458 FunFam Integrin-linked protein kinase family 24 149 - -
Stsc120833g00075 458 CDD STKc_MAP3K-like 164 411 - -
Stsc120833g00075 458 SUPERFAMILY Ankyrin repeat 44 135 IPR036770 -
Stsc120833g00075 458 MobiDBLite consensus disorder prediction 15 39 - -
Stsc120833g00075 458 MobiDBLite consensus disorder prediction 1 41 - -
Stsc120833g00075 458 PIRSF ILK 1 434 - -
Stsc120833g00075 458 Gene3D Transferase(Phosphotransferase) domain 1 143 434 - -
Stsc120833g00075 458 Pfam Ankyrin repeats (3 copies) 45 133 IPR002110 GO:0005515
Stsc120833g00075 458 Pfam Protein tyrosine and serine/threonine kinase 172 411 IPR001245 GO:0004672|GO:0006468
Stsc120833g00075 458 ProSiteProfiles Protein kinase domain profile. 158 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120833g00075 458 SMART ANK_2a 37 69 IPR002110 GO:0005515
Stsc120833g00075 458 SMART ANK_2a 73 102 IPR002110 GO:0005515
Stsc120833g00075 458 SMART ANK_2a 106 135 IPR002110 GO:0005515
Stsc120833g00075 458 FunFam Os01g0748600 protein 144 431 - -
Stsc120833g00075 458 SUPERFAMILY Protein kinase-like (PK-like) 143 411 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00075 Stsc-Chr120833 307213 311241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00075 8 432 MAP Kinase Kinase Kinase AT4G18950 69.014 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Stsc120833g00075 PK_Tyr_Ser-Thr 6.5e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00075 - - gmx:100790126 781.171