Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00068 ATGATCGGTCGCACCTTCAATGATCACTCACTCCTTGATGACATGAAGCTCTGGCCTTTTAAGGTTGTCCCTCACCCTAACAACAACAACAATCCAGCCATTTTTGTTGACCATAAGGGTCAACATACTACTTACTTTACACCCGTAGAGGTCTCTGCCATGGTGATCAAAGAGCTGAAGGAGGTTGCTGAAGCTTCTTTAGGCCATCCTGTGAAGGATGCAGTCATCACTGTCCCTGCTTACTTCAACAACTCTCAGAGACAAGCCACCATAGACGCCGGAAAGATCGCCGGACTTAACGTCATGACGATCATAAACGAGCCTACTGCTGCTGCCATTTCTTATGGCTTCGACAACAAGACTTGGAGGGAAGGTGAGAGGGATGTGCTTGTGTTTGATCTTGGTGGAGGCACTTTGGATGTTTCATTGGTGACAATTGATGAAGGGATGTTCAAGGTGAAGGCCACTTTGGGAGACACACATTTGGGAGGTTTAGATTTTGATAACAAAATGGTGAACCATTGTGTTGAATTGTTTAAAGGGAAATACAACAAGGACATTAGTGGGGATGTGAAAGCTTTGGGGAGGTTAAGGTCACATTGTGAGAAAGCCAAGAGGACTCTCTCTTCCAATTCAGAAACAAGAATCGAAATTGATGGTTTATATGAAGGTATTGATCTTTACCTCACTGTTACTAGAGCTGAATTTGAGGAACTGAACAAAGACTTGTTCAACAAGTGCATGGAGACAGTGAAGAACTGCCTAATTCAGGCTAAGGTTGATAAAAGCCAAGTACATGAGATTGTTCTAGTTGGTGGCTCTACTAGAATTCCAAAAGTTCAGCAACTCTTGAAGGAGATGTTCAGTGTCAATGGTAGGGTTAAGGAGCTTTGCAAAAGCATCAATGCTGATGAGGCCGTGGCGTATGGTGCTGCGGTTCAGGCAGCAATGTTGAGTGGTGAAAAAGACAAGAAAGTGGAAGAGCTCTTGTTGCTTGATGTGTTCCCGCTAAGCCTTGGAATTTGA 1026 0.4405 MIGRTFNDHSLLDDMKLWPFKVVPHPNNNNNPAIFVDHKGQHTTYFTPVEVSAMVIKELKEVAEASLGHPVKDAVITVPAYFNNSQRQATIDAGKIAGLNVMTIINEPTAAAISYGFDNKTWREGERDVLVFDLGGGTLDVSLVTIDEGMFKVKATLGDTHLGGLDFDNKMVNHCVELFKGKYNKDISGDVKALGRLRSHCEKAKRTLSSNSETRIEIDGLYEGIDLYLTVTRAEFEELNKDLFNKCMETVKNCLIQAKVDKSQVHEIVLVGGSTRIPKVQQLLKEMFSVNGRVKELCKSINADEAVAYGAAVQAAMLSGEKDKKVEELLLLDVFPLSLGI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00068 341 Gene3D Actin; Chain A, domain 4 163 246 - -
Stsc120833g00068 341 Pfam Hsp70 protein 1 341 IPR013126 GO:0005524|GO:0140662
Stsc120833g00068 341 ProSitePatterns Heat shock hsp70 proteins family signature 3. 268 282 IPR018181 -
Stsc120833g00068 341 ProSitePatterns Heat shock hsp70 proteins family signature 2. 131 144 IPR018181 -
Stsc120833g00068 341 Gene3D - 1 316 - -
Stsc120833g00068 341 SUPERFAMILY Actin-like ATPase domain 1 118 IPR043129 -
Stsc120833g00068 341 Gene3D - 120 301 - -
Stsc120833g00068 341 PANTHER HEAT SHOCK PROTEIN 70KDA 1 341 IPR013126 GO:0005524|GO:0140662
Stsc120833g00068 341 FunFam Endoplasmic reticulum chaperone BiP 26 130 - -
Stsc120833g00068 341 SUPERFAMILY Actin-like ATPase domain 127 318 IPR043129 -
Stsc120833g00068 341 PRINTS 70kDa heat shock protein signature 328 341 - -
Stsc120833g00068 341 PRINTS 70kDa heat shock protein signature 301 321 - -
Stsc120833g00068 341 PRINTS 70kDa heat shock protein signature 137 147 - -
Stsc120833g00068 341 PRINTS 70kDa heat shock protein signature 74 94 - -
Stsc120833g00068 341 FunFam Heat shock 70 kDa 163 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00068 Stsc-Chr120833 287833 289353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00068 1 341 Calmodulin-binding Proteins AT3G12580 66.276 1.35e-156 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00068 K03283 - gmx:100795699 459.144