Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120833g00067 ATGGCAACAAGTTCAAGTTCAAGTTCAAGCAACAAAGCCAAAGCCATAGGCATTGACCTTGGCACAACTTATAGTTGTGTAGCAGTGTGGCAGAACAACCATGTTGAGATCATTCCAAACGAACAAGGCAACCGCATCACACCTTCTTGTGTTTCATTCACTGATACTCAAAGATTACTTGGCGATGCAGCCATTAACCAACTCTCCTTGAACCCACACAACACTGTCTTTGATGCTAAACGCTTGATTGGTCGCACCTTCAATGATCTCTCAGTTCAAGAGGACATGAAGCTCTGGCCTTTTAAGGTTGTTCCTGATCCTAACAACAACAAGAAGCCAGCCATTCTTGTTAACTATAAGTGTGAAGAGAGATACCTTGCACCTGAAGAGGTCTCTTCCATGGTGCTCTTCAAGATGAAGGAGGTTGCTGAAGCTTATTTAGGCCATTCTGTGAAGGATGCAGTCATCACTGTCCCCGCTTACTTCAACAACTCTCAGAGGNNNNNNNNNNACGCCGGAGAAATCGCCGGTCTTAACGTTTTGAGGATCATAAACGAGCCTACTGCTGCTGCCATTGCTTATGGCTTCGACAAGAAGACTTGGAGGGAAGGTGAGAAGAATGTGCTTGTGTTTGATCTTGGTGGAGGCACTTTGGATGTTTCATTGGTGACAATTGATGAAGGGATGTTCAAGGTGAAGGCCACTTTGGGAGACACACATTTGGGAGGTGAGGATTTTGATAACAAAATGGTGAACCATTGTGTTGAATTGTTTAAAGGGAAATACAACAAGGACATTAGTGGGAATCTGAAAGCTTTGAGGAGGTTAAGGTCACATTGTGAGAGAGCCAAGAGGACTTTATCTTCCAATTCACAAACAAGAATCGAAATCGATGCTTTATATGAAGGTATTGATCTTTACCTGACTGTTACTCGAGCTGCATTTGAGGAACTGAACAAAGACTTGTTCAACAAGTGCATGGAGACAGTGAAGAACTGCCTAATTCAGGCTAAGGTTGATAAAAGCCAAGTCGATGAGATTGTTCTAGTTGGTGGGTCTACTAGAATTCCAAAAGTTCAGCAACTCTTGAAGGAGATGTTCTGTGTCAATGGGAGGGTGAAAGAGCTTTGCAAAAGCATCAATGCTGATGAGGCTGTGGCTTATGGTGCTGCGGTTCAGGCAGCAATATTGAGTGGTGAAAGAGACAAGAAAGTGGAGGAGCTCTTGTTGCTTGATGTGTTGCCTTTAAGCCTTGGAATTGAAGCTTCCGGTGGAGCCATGTCGGTTTTGATTCCGAAGAACACAACGATTCCCACCAAGAAAGAGAGGTTTTTTCTACTTCATATGAGGACCAAAGCAGTGCTATGA 1368 0.4342 MATSSSSSSSNKAKAIGIDLGTTYSCVAVWQNNHVEIIPNEQGNRITPSCVSFTDTQRLLGDAAINQLSLNPHNTVFDAKRLIGRTFNDLSVQEDMKLWPFKVVPDPNNNKKPAILVNYKCEERYLAPEEVSSMVLFKMKEVAEAYLGHSVKDAVITVPAYFNNSQRXXXXAGEIAGLNVLRIINEPTAAAIAYGFDKKTWREGEKNVLVFDLGGGTLDVSLVTIDEGMFKVKATLGDTHLGGEDFDNKMVNHCVELFKGKYNKDISGNLKALRRLRSHCERAKRTLSSNSQTRIEIDALYEGIDLYLTVTRAAFEELNKDLFNKCMETVKNCLIQAKVDKSQVDEIVLVGGSTRIPKVQQLLKEMFCVNGRVKELCKSINADEAVAYGAAVQAAILSGERDKKVEELLLLDVLPLSLGIEASGGAMSVLIPKNTTIPTKKERFFLLHMRTKAVL 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120833g00067 455 SUPERFAMILY Actin-like ATPase domain 203 399 IPR043129 -
Stsc120833g00067 455 ProSitePatterns Heat shock hsp70 proteins family signature 2. 210 223 IPR018181 -
Stsc120833g00067 455 Gene3D - 77 134 - -
Stsc120833g00067 455 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 404 446 IPR029047 -
Stsc120833g00067 455 SUPERFAMILY Actin-like ATPase domain 14 198 IPR043129 -
Stsc120833g00067 455 Gene3D - 199 377 - -
Stsc120833g00067 455 Gene3D - 16 394 - -
Stsc120833g00067 455 Gene3D Actin; Chain A, domain 4 243 325 - -
Stsc120833g00067 455 Pfam Hsp70 protein 15 447 IPR013126 GO:0005524|GO:0140662
Stsc120833g00067 455 PANTHER HEAT SHOCK PROTEIN 70KDA 15 445 IPR013126 GO:0005524|GO:0140662
Stsc120833g00067 455 ProSitePatterns Heat shock hsp70 proteins family signature 1. 18 25 IPR018181 -
Stsc120833g00067 455 ProSitePatterns Heat shock hsp70 proteins family signature 3. 347 361 IPR018181 -
Stsc120833g00067 455 FunFam heat shock 70 kDa protein-like 77 134 - -
Stsc120833g00067 455 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 395 451 IPR029047 -
Stsc120833g00067 455 FunFam Heat shock protein 70 16 206 - -
Stsc120833g00067 455 PRINTS 70kDa heat shock protein signature 42 54 - -
Stsc120833g00067 455 PRINTS 70kDa heat shock protein signature 14 27 - -
Stsc120833g00067 455 PRINTS 70kDa heat shock protein signature 64 72 - -
Stsc120833g00067 455 PRINTS 70kDa heat shock protein signature 154 174 - -
Stsc120833g00067 455 PRINTS 70kDa heat shock protein signature 216 226 - -
Stsc120833g00067 455 PRINTS 70kDa heat shock protein signature 380 400 - -
Stsc120833g00067 455 PRINTS 70kDa heat shock protein signature 407 426 - -
Stsc120833g00067 455 FunFam Heat shock 70 kDa 242 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120833g00067 Stsc-Chr120833 283594 286371 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120833g00067 1 445 Calmodulin-binding Proteins AT1G16030 69.507 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120833g00067 K03283 - gmx:100795699 637.491